Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed08g2530 | ATGGCATCATCATCAACAGTAGTAACTCCAACAAGTCACTATTGCAGCCCTTGTGCAGCCTGCAAATTCCTAAGAAGAAAATGCGCACCCGGATGTATTTTTGCACCATATTTCCCACCAGAGGAACCTCAAAAATTCGCCAACGTTCACAAGGTTTTCGGAGCCAGCAACGTCGCCAAGCTCCTCAACGAAGTTCTGCCTCATCAGCGACCAGACGCGGTCGTTTCGCTTGCGTACGAGGCCGAGGCTAGAATCAGAGATCCCGTTTACGGCTGCGTTGGTGCGATTTCCTTCCTTCAAAAACAGGTCCAAAGGCTCCAAAAGGAACTTGATGCAGCTAAAGCTTGCCTTTTTCTCCACTATTGCAATGATTTTTCAGGTCCTTATTCATCACAGCCCCAAATTGTTTGCCCTCCTCTGATTTGGAACAACAACAACAATAATAATAATTATGATGTTAATTCTGCTAATTCTGCTAATTCTTCTGCTATGTATTTTAATGGAGGATTTTGA | 513 | 44.25 | MASSSTVVTPTSHYCSPCAACKFLRRKCAPGCIFAPYFPPEEPQKFANVHKVFGASNVAKLLNEVLPHQRPDAVVSLAYEAEARIRDPVYGCVGAISFLQKQVQRLQKELDAAKACLFLHYCNDFSGPYSSQPQIVCPPLIWNNNNNNNNYDVNSANSANSSAMYFNGGF | 170 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 38024923 | 38025435 | - | Sed0013421.1 | Sed08g2530 | 724306 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed08g2530 | 170 | Coils | Coil | 96 | 116 | - | - | |
Sed08g2530 | 170 | ProSiteProfiles | LOB domain profile. | 16 | 117 | IPR004883 | - | |
Sed08g2530 | 170 | Pfam | Lateral organ boundaries (LOB) domain | 17 | 114 | IPR004883 | - | |
Sed08g2530 | 170 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 16 | 143 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed08g2530 | Sed-Chr8:38024923 | Sed12g2463 | Sed-Chr12:34257423 | 4.20E-51 | dispersed | |
Sed01g1628 | Sed-Chr1:11844777 | Sed08g2530 | Sed-Chr8:38024923 | 3.70E-53 | wgd | |
Sed08g0088 | Sed-Chr8:496474 | Sed08g2530 | Sed-Chr8:38024923 | 1.60E-51 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39449 | PF03195 | LOB | 2.10E-42 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed08g2530 | - | - | - | 0.0 |