Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2530 ATGGCATCATCATCAACAGTAGTAACTCCAACAAGTCACTATTGCAGCCCTTGTGCAGCCTGCAAATTCCTAAGAAGAAAATGCGCACCCGGATGTATTTTTGCACCATATTTCCCACCAGAGGAACCTCAAAAATTCGCCAACGTTCACAAGGTTTTCGGAGCCAGCAACGTCGCCAAGCTCCTCAACGAAGTTCTGCCTCATCAGCGACCAGACGCGGTCGTTTCGCTTGCGTACGAGGCCGAGGCTAGAATCAGAGATCCCGTTTACGGCTGCGTTGGTGCGATTTCCTTCCTTCAAAAACAGGTCCAAAGGCTCCAAAAGGAACTTGATGCAGCTAAAGCTTGCCTTTTTCTCCACTATTGCAATGATTTTTCAGGTCCTTATTCATCACAGCCCCAAATTGTTTGCCCTCCTCTGATTTGGAACAACAACAACAATAATAATAATTATGATGTTAATTCTGCTAATTCTGCTAATTCTTCTGCTATGTATTTTAATGGAGGATTTTGA 513 44.25 MASSSTVVTPTSHYCSPCAACKFLRRKCAPGCIFAPYFPPEEPQKFANVHKVFGASNVAKLLNEVLPHQRPDAVVSLAYEAEARIRDPVYGCVGAISFLQKQVQRLQKELDAAKACLFLHYCNDFSGPYSSQPQIVCPPLIWNNNNNNNNYDVNSANSANSSAMYFNGGF 170
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 38024923 38025435 - Sed0013421.1 Sed08g2530 724306
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2530 170 Coils Coil 96 116 - -
Sed08g2530 170 ProSiteProfiles LOB domain profile. 16 117 IPR004883 -
Sed08g2530 170 Pfam Lateral organ boundaries (LOB) domain 17 114 IPR004883 -
Sed08g2530 170 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 16 143 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2530 Sed-Chr8:38024923 Sed12g2463 Sed-Chr12:34257423 4.20E-51 dispersed
Sed01g1628 Sed-Chr1:11844777 Sed08g2530 Sed-Chr8:38024923 3.70E-53 wgd
Sed08g0088 Sed-Chr8:496474 Sed08g2530 Sed-Chr8:38024923 1.60E-51 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39449 PF03195 LOB 2.10E-42 No_clan Sed TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2530 - - - 0.0