Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2534 ATGGCTTTCCCCTTACTCTTTCTTCTTTTCCTCTCCATTCCCTTCTCCGTCGACGCGAAACTTAGGCTCGATTATTACAAAACCACGTGTCCCGACTTCGAGAAGATCATCCGCGAGACCGTCACTAGTAAGCAAATCTCAAGCCCCGTCACTGCTGCCGGTACCCTTCGCCTCTTCTTCCATGACTGCATGGTTGATGGATGCGACGCCTCCATCCTCATTTCCTCTAATTCCTTTAACCAGGCCGAGCGCGATGCCGAAGTCAACCACTCCCTCTCAGGCGATGCCTTTGATGTCGTAGTCCATGCCAAGACTACCCTTGAACTCTCCTGCCCTGGCATTGTCTCTTGTTCCGACATCTTGGCACAGGCGACTCGAGATTTGGTGGTAATGGTGGGCGGTCCATTCTATAAGGTTCGATTGGGAAGAAAAGACGGATACATTTCAAAGATAGAAAACGTGGGACCCAACCTCCCACTGGTGAACCACACCGTAGACCAACTCATAGATTTCTTCACGGTCCGAGGGTTCACGGTCCAGGAACTGGTAGCCCTCTCGGGCGGCCACACGGTCGGGTTTTCCCACTGCAAAGAATTCGCGGACCGGCTGTTCAAATTCAGCGCCACGTCACCCACCGACCCTGACATCCACCCCAAATTCGCTGACAAGCTCAAGGCCATGTGTGCAAACTTCACCACCGATACTTCCATGTCGGCTTTCAACGACGTCATGACACCTGGCAAGTTCGACAACATGTACTTTCAGAATCTGGCACGTGGCCTCGGCCTGCTGGCTTCGGATAATGCCTTGGTCAAGGATCCCAGGACTAAGACGTTTGTGGACCTTTACGCCGTTAACCAGACGGCGTTTTTTAACGACTTTGCCCGCGCGATGGAGAAGCTTAGCGTTTTCGGCGTTAAGTCTGGACGGAAAGGGGAGGTTCGACGTAAGTGTGATCACTTCAATTCCGTTAAGACTTGA 981 52.4 MAFPLLFLLFLSIPFSVDAKLRLDYYKTTCPDFEKIIRETVTSKQISSPVTAAGTLRLFFHDCMVDGCDASILISSNSFNQAERDAEVNHSLSGDAFDVVVHAKTTLELSCPGIVSCSDILAQATRDLVVMVGGPFYKVRLGRKDGYISKIENVGPNLPLVNHTVDQLIDFFTVRGFTVQELVALSGGHTVGFSHCKEFADRLFKFSATSPTDPDIHPKFADKLKAMCANFTTDTSMSAFNDVMTPGKFDNMYFQNLARGLGLLASDNALVKDPRTKTFVDLYAVNQTAFFNDFARAMEKLSVFGVKSGRKGEVRRKCDHFNSVKT 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 38049478 38051280 + Sed0011091.1 Sed08g2534 724310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2534 326 ProSitePatterns Peroxidases proximal heme-ligand signature. 181 191 IPR019793 -
Sed08g2534 326 SUPERFAMILY Heme-dependent peroxidases 21 322 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g2534 326 ProSiteProfiles Plant heme peroxidase family profile. 20 322 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g2534 326 Gene3D Peroxidase, domain 2 159 301 - -
Sed08g2534 326 CDD secretory_peroxidase 20 321 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Sed08g2534 326 PRINTS Haem peroxidase superfamily signature 242 257 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g2534 326 PRINTS Haem peroxidase superfamily signature 133 145 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g2534 326 PRINTS Haem peroxidase superfamily signature 52 66 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g2534 326 PRINTS Haem peroxidase superfamily signature 115 132 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g2534 326 PRINTS Haem peroxidase superfamily signature 181 196 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g2534 326 PANTHER - 9 322 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g2534 326 ProSitePatterns Peroxidases active site signature. 52 63 IPR019794 GO:0004601(InterPro)
Sed08g2534 326 FunFam Peroxidase 24 169 - -
Sed08g2534 326 FunFam Peroxidase 159 301 - -
Sed08g2534 326 Gene3D - 24 322 - -
Sed08g2534 326 PRINTS Plant peroxidase signature 256 273 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g2534 326 PRINTS Plant peroxidase signature 133 148 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g2534 326 PRINTS Plant peroxidase signature 296 309 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g2534 326 PRINTS Plant peroxidase signature 30 49 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g2534 326 PRINTS Plant peroxidase signature 54 74 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g2534 326 PRINTS Plant peroxidase signature 95 108 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g2534 326 PRINTS Plant peroxidase signature 180 192 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g2534 326 PRINTS Plant peroxidase signature 114 124 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g2534 326 PRINTS Plant peroxidase signature 240 255 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g2534 326 Pfam Peroxidase 38 285 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0585 Sed-Chr6:5125060 Sed08g2534 Sed-Chr8:38049478 1.20E-102 dispersed
Sed08g1372 Sed-Chr8:28302487 Sed08g2534 Sed-Chr8:38049478 3.90E-106 dispersed
Sed08g2534 Sed-Chr8:38049478 Sed14g0905 Sed-Chr14:17988303 5.50E-76 dispersed
Sed01g2140 Sed-Chr1:16054982 Sed08g2534 Sed-Chr8:38049478 3.20E-53 transposed
Sed12g1902 Sed-Chr12:30187499 Sed08g2534 Sed-Chr8:38049478 5.30E-64 wgd
Sed08g0165 Sed-Chr8:898595 Sed08g2534 Sed-Chr8:38049478 4.40E-118 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2534 K00430 - csv:101220163 535.028