Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2541 ATGGCTGCGCTTCCATCTTCCTCTGCTTTACCGGATTCCTCCTCTTCCAGGCACCATGCTTACAGTCGGAAGCAGAAATCCCTAGGTCTTTTATGCTCCAATTTTTTGAGCTTGTATAACCACGACGGAGTTCACTCGATTGGGCTTGATGATGCTGCCTCGCGATTAGGTGTTGAAAGACGGCGGATCTATGATATTGTTAATGTATTGGAGAGCGTTGGGGTTCTGGCGAGAAAAGCGAAGAATCAGTATAGTTGGAATGGGTTTGGAGCAATCCCTAAGGCATTGCAAGATCTTAAGGAAGAGGGATTGAAGGAGAATTGCAATGCTTCTGATGGTAACGATTATGCAAAAGTCTCGGACGATGAAGATGACGATGAAAGATTTTCAAATCCAACAGGAAGTCAGAACTCAACTGCCACCATGCCCAAATCTTCATCTTTAAAAGCCGACAATAGAAGGGAAAAGTCATTGGCGCTTCTGACTCAGAATTTTGTTAAGTTATTTATATGCAGTCATCTGAATATGATTTCCCTCGATGAAGCTGCAAGGCTCTTACTAGGAGATGGCCACAACTCATCAATAATGAGAACAAAGGTGAGGCGGCTATATGACATTGCGAATGTGCTATCTTCTATGAATCTAATCGAGAAGACTCATACAGCTGACACAAGGAAGCCTGCGTTTAGGTGGTTGGGAGTGAGGGGTAAAGTCAAGAATGAGCCTACTGTTCTTCCAGAGTCCAGAAAAAGGGTATTTGGAACTGACGTTACAAATGTTAGTAACAAGAAAGTTAAGGTTGGAAATTCAGCCTATCAGAGTTTAAACCATTGCCTCGACAACCAAAAGCTTGTGCGGTGCGAGAATTCTTCCCAAGAGGATAGCCAAAACAGCCAGGATCAGGAATGCGAACGAACGTCCAAGAGCTATCAATTTGGACCATTTGCTCCTGTAACAGTAGCGAAAGTTGGCATCTCAGACAATAACAATGTGAAGCAGACTCACGATTGGGAAAGCCTTTCCTCAACATTTCGCCCTCAGTATCACAACCAAGGTTTCTGGATGCAGTTCTTGTGA 1077 43.83 MAALPSSSALPDSSSSRHHAYSRKQKSLGLLCSNFLSLYNHDGVHSIGLDDAASRLGVERRRIYDIVNVLESVGVLARKAKNQYSWNGFGAIPKALQDLKEEGLKENCNASDGNDYAKVSDDEDDDERFSNPTGSQNSTATMPKSSSLKADNRREKSLALLTQNFVKLFICSHLNMISLDEAARLLLGDGHNSSIMRTKVRRLYDIANVLSSMNLIEKTHTADTRKPAFRWLGVRGKVKNEPTVLPESRKRVFGTDVTNVSNKKVKVGNSAYQSLNHCLDNQKLVRCENSSQEDSQNSQDQECERTSKSYQFGPFAPVTVAKVGISDNNNVKQTHDWESLSSTFRPQYHNQGFWMQFL 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 38087135 38090553 - Sed0027046.3 Sed08g2541 724317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2541 358 FunFam E2F transcription factor-like E2FE 148 235 - -
Sed08g2541 358 SUPERFAMILY Winged helix DNA-binding domain 155 234 IPR036390 -
Sed08g2541 358 SMART E2F_TDP_2 153 233 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Sed08g2541 358 SMART E2F_TDP_2 23 88 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Sed08g2541 358 FunFam E2F transcription factor 8 18 90 - -
Sed08g2541 358 Pfam E2F/DP family winged-helix DNA-binding domain 154 233 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Sed08g2541 358 Pfam E2F/DP family winged-helix DNA-binding domain 24 88 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Sed08g2541 358 Gene3D - 18 91 IPR036388 -
Sed08g2541 358 Gene3D - 148 235 IPR036388 -
Sed08g2541 358 PANTHER TRANSCRIPTION FACTOR E2F 9 350 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0090575(PANTHER)
Sed08g2541 358 MobiDBLite consensus disorder prediction 106 150 - -
Sed08g2541 358 MobiDBLite consensus disorder prediction 131 147 - -
Sed08g2541 358 SUPERFAMILY Winged helix DNA-binding domain 22 86 IPR036390 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2541 Sed-Chr8:38087135 Sed08g2543 Sed-Chr8:38087592 6.20E-198 dispersed
Sed08g2541 Sed-Chr8:38087135 Sed08g2542 Sed-Chr8:38087592 3.10E-197 tandem
Sed01g1687 Sed-Chr1:12242894 Sed08g2541 Sed-Chr8:38087135 4.30E-170 wgd
Sed08g0171 Sed-Chr8:940256 Sed08g2541 Sed-Chr8:38087135 6.40E-89 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39450 PF02319 E2F_TDP 3.30E-20 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2541 K09391 - csv:101219210 639.802