Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed08g2542 | ATGGCTGCGCTTCCATCTTCCTCTGCTTTACCGGATTCCTCCTCTTCCAGGCACCATGCTTACAGTCGGAAGCAGAAATCCCTAGGTCTTTTATGCTCCAATTTTTTGAGCTTGTATAACCACGACGGAGTTCACTCGATTGGGCTTGATGATGCTGCCTCGCGATTAGGTGTTGAAAGACGGCGGATCTATGATATTGTTAATGTATTGGAGAGCGTTGGGGTTCTGGCGAGAAAAGCGAAGAATCAGTATAGTTGGAATGGGTTTGGAGCAATCCCTAAGGCATTGCAAGATCTTAAGGAAGAGGGATTGAAGGAGAATTGCAATGCTTCTGATGGTAACGATTATGCAAAAGTCTCGGACGATGAAGATGACGATGAAAGATTTTCAAATCCAACAGGAAGTCAGAACTCAACTGCCACCATGCCCAAATCTTCATCTTTAAAAGCCGACAATAGAAGGGAAAAGTCATTGGCGCTTCTGACTCAGAATTTTGTTAAGTTATTTATATGCAGTCATCTGAATATGATTTCCCTCGATGAAGCTGCAAGGCTCTTACTAGGAGATGGCCACAACTCATCAATAATGAGAACAAAGGTGAGGCGGCTATATGACATTGCGAATGTGCTATCTTCTATGAATCTAATCGAGAAGACTCATACAGCTGACACAAGGAAGCCTGCGTTTAGGTGGTTGGGAGTGAGGGGTAAAGTCAAGAATGAGCCTACTGTTCTTCCAGAGTCCAGAAAAAGGGTATTTGGAACTGACGTTACAAATGTTAGTAACAAGAAAGTTAAGGTTGGAAATTCAGCCTATCAGAGTTTAAACCATTGCCTCGACAACCAAAAGCTTGTGCGGTGCGAGAATTCTTCCCAAGAGGATAGCCAAAACAGCCAGGATCAGGAATGCGAACGAACGTCCAAGAGCTATCAATTTGGACCATTTGCTCCTGTAACAGTAGCGAAAGTTGGCATCTCAGACAATAACAATGTGAAGCAGACTCACGATTGGGAAAGCCTTTCCTCAACATTTCGCCCTCAGTATCACAACCAAGCCTTAAGAGAACTTTTCTCCCATTACGTGGAAGCTTGGAAATCATGGTATTCTGAAGCAGTGGAGAAACCTATACAAATATCTTGA | 1140 | 43.42 | MAALPSSSALPDSSSSRHHAYSRKQKSLGLLCSNFLSLYNHDGVHSIGLDDAASRLGVERRRIYDIVNVLESVGVLARKAKNQYSWNGFGAIPKALQDLKEEGLKENCNASDGNDYAKVSDDEDDDERFSNPTGSQNSTATMPKSSSLKADNRREKSLALLTQNFVKLFICSHLNMISLDEAARLLLGDGHNSSIMRTKVRRLYDIANVLSSMNLIEKTHTADTRKPAFRWLGVRGKVKNEPTVLPESRKRVFGTDVTNVSNKKVKVGNSAYQSLNHCLDNQKLVRCENSSQEDSQNSQDQECERTSKSYQFGPFAPVTVAKVGISDNNNVKQTHDWESLSSTFRPQYHNQALRELFSHYVEAWKSWYSEAVEKPIQIS | 379 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 38087592 | 38090553 | - | Sed0027046.1 | Sed08g2542 | 724318 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed08g2542 | 379 | FunFam | E2F transcription factor-like E2FE | 148 | 235 | - | - | |
Sed08g2542 | 379 | PANTHER | TRANSCRIPTION FACTOR E2F | 9 | 352 | IPR015633 | GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0090575(PANTHER) | |
Sed08g2542 | 379 | SUPERFAMILY | Winged helix DNA-binding domain | 22 | 86 | IPR036390 | - | |
Sed08g2542 | 379 | SMART | E2F_TDP_2 | 153 | 233 | IPR003316 | GO:0005667(InterPro)|GO:0006355(InterPro) | |
Sed08g2542 | 379 | SMART | E2F_TDP_2 | 23 | 88 | IPR003316 | GO:0005667(InterPro)|GO:0006355(InterPro) | |
Sed08g2542 | 379 | Gene3D | - | 148 | 235 | IPR036388 | - | |
Sed08g2542 | 379 | Gene3D | - | 18 | 91 | IPR036388 | - | |
Sed08g2542 | 379 | MobiDBLite | consensus disorder prediction | 106 | 150 | - | - | |
Sed08g2542 | 379 | FunFam | E2F transcription factor 8 | 18 | 90 | - | - | |
Sed08g2542 | 379 | Pfam | E2F/DP family winged-helix DNA-binding domain | 154 | 233 | IPR003316 | GO:0005667(InterPro)|GO:0006355(InterPro) | |
Sed08g2542 | 379 | Pfam | E2F/DP family winged-helix DNA-binding domain | 24 | 88 | IPR003316 | GO:0005667(InterPro)|GO:0006355(InterPro) | |
Sed08g2542 | 379 | MobiDBLite | consensus disorder prediction | 131 | 147 | - | - | |
Sed08g2542 | 379 | SUPERFAMILY | Winged helix DNA-binding domain | 155 | 234 | IPR036390 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g1687 | Sed-Chr1:12242894 | Sed08g2542 | Sed-Chr8:38087592 | 7.40E-186 | dispersed | |
Sed08g0171 | Sed-Chr8:940256 | Sed08g2542 | Sed-Chr8:38087592 | 5.20E-99 | dispersed | |
Sed08g2542 | Sed-Chr8:38087592 | Sed14g0279 | Sed-Chr14:2893542 | 2.30E-09 | dispersed | |
Sed08g2541 | Sed-Chr8:38087135 | Sed08g2542 | Sed-Chr8:38087592 | 3.10E-197 | tandem | |
Sed08g2542 | Sed-Chr8:38087592 | Sed08g2543 | Sed-Chr8:38087592 | 7.30E-197 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39451 | PF02319 | E2F_TDP | 3.60E-20 | CL0123 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed08g2542 | K09391 | - | csv:101219210 | 694.501 |