Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2542 ATGGCTGCGCTTCCATCTTCCTCTGCTTTACCGGATTCCTCCTCTTCCAGGCACCATGCTTACAGTCGGAAGCAGAAATCCCTAGGTCTTTTATGCTCCAATTTTTTGAGCTTGTATAACCACGACGGAGTTCACTCGATTGGGCTTGATGATGCTGCCTCGCGATTAGGTGTTGAAAGACGGCGGATCTATGATATTGTTAATGTATTGGAGAGCGTTGGGGTTCTGGCGAGAAAAGCGAAGAATCAGTATAGTTGGAATGGGTTTGGAGCAATCCCTAAGGCATTGCAAGATCTTAAGGAAGAGGGATTGAAGGAGAATTGCAATGCTTCTGATGGTAACGATTATGCAAAAGTCTCGGACGATGAAGATGACGATGAAAGATTTTCAAATCCAACAGGAAGTCAGAACTCAACTGCCACCATGCCCAAATCTTCATCTTTAAAAGCCGACAATAGAAGGGAAAAGTCATTGGCGCTTCTGACTCAGAATTTTGTTAAGTTATTTATATGCAGTCATCTGAATATGATTTCCCTCGATGAAGCTGCAAGGCTCTTACTAGGAGATGGCCACAACTCATCAATAATGAGAACAAAGGTGAGGCGGCTATATGACATTGCGAATGTGCTATCTTCTATGAATCTAATCGAGAAGACTCATACAGCTGACACAAGGAAGCCTGCGTTTAGGTGGTTGGGAGTGAGGGGTAAAGTCAAGAATGAGCCTACTGTTCTTCCAGAGTCCAGAAAAAGGGTATTTGGAACTGACGTTACAAATGTTAGTAACAAGAAAGTTAAGGTTGGAAATTCAGCCTATCAGAGTTTAAACCATTGCCTCGACAACCAAAAGCTTGTGCGGTGCGAGAATTCTTCCCAAGAGGATAGCCAAAACAGCCAGGATCAGGAATGCGAACGAACGTCCAAGAGCTATCAATTTGGACCATTTGCTCCTGTAACAGTAGCGAAAGTTGGCATCTCAGACAATAACAATGTGAAGCAGACTCACGATTGGGAAAGCCTTTCCTCAACATTTCGCCCTCAGTATCACAACCAAGCCTTAAGAGAACTTTTCTCCCATTACGTGGAAGCTTGGAAATCATGGTATTCTGAAGCAGTGGAGAAACCTATACAAATATCTTGA 1140 43.42 MAALPSSSALPDSSSSRHHAYSRKQKSLGLLCSNFLSLYNHDGVHSIGLDDAASRLGVERRRIYDIVNVLESVGVLARKAKNQYSWNGFGAIPKALQDLKEEGLKENCNASDGNDYAKVSDDEDDDERFSNPTGSQNSTATMPKSSSLKADNRREKSLALLTQNFVKLFICSHLNMISLDEAARLLLGDGHNSSIMRTKVRRLYDIANVLSSMNLIEKTHTADTRKPAFRWLGVRGKVKNEPTVLPESRKRVFGTDVTNVSNKKVKVGNSAYQSLNHCLDNQKLVRCENSSQEDSQNSQDQECERTSKSYQFGPFAPVTVAKVGISDNNNVKQTHDWESLSSTFRPQYHNQALRELFSHYVEAWKSWYSEAVEKPIQIS 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 38087592 38090553 - Sed0027046.1 Sed08g2542 724318

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2542 379 FunFam E2F transcription factor-like E2FE 148 235 - -
Sed08g2542 379 PANTHER TRANSCRIPTION FACTOR E2F 9 352 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0090575(PANTHER)
Sed08g2542 379 SUPERFAMILY Winged helix DNA-binding domain 22 86 IPR036390 -
Sed08g2542 379 SMART E2F_TDP_2 153 233 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Sed08g2542 379 SMART E2F_TDP_2 23 88 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Sed08g2542 379 Gene3D - 148 235 IPR036388 -
Sed08g2542 379 Gene3D - 18 91 IPR036388 -
Sed08g2542 379 MobiDBLite consensus disorder prediction 106 150 - -
Sed08g2542 379 FunFam E2F transcription factor 8 18 90 - -
Sed08g2542 379 Pfam E2F/DP family winged-helix DNA-binding domain 154 233 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Sed08g2542 379 Pfam E2F/DP family winged-helix DNA-binding domain 24 88 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Sed08g2542 379 MobiDBLite consensus disorder prediction 131 147 - -
Sed08g2542 379 SUPERFAMILY Winged helix DNA-binding domain 155 234 IPR036390 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2542 K09391 - - csv:101219210 694.501
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1687 Sed-Chr1:12242894 Sed08g2542 Sed-Chr8:38087592 7.40E-186 dispersed
Sed08g0171 Sed-Chr8:940256 Sed08g2542 Sed-Chr8:38087592 5.20E-99 dispersed
Sed08g2542 Sed-Chr8:38087592 Sed14g0279 Sed-Chr14:2893542 2.30E-09 dispersed
Sed08g2541 Sed-Chr8:38087135 Sed08g2542 Sed-Chr8:38087592 3.10E-197 tandem
Sed08g2542 Sed-Chr8:38087592 Sed08g2543 Sed-Chr8:38087592 7.30E-197 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed08g2542 . 3 374 E2F-DP Transcription Factor Family AT3G48160 54.4 4.2e-102 369.4
Sed01g1687 . 3 366 E2F-DP Transcription Factor Family AT3G48160 55.5 1.4e-100 364.4
Sed08g2541 . 3 351 E2F-DP Transcription Factor Family AT3G48160 54.5 1.2e-91 334.7
Sed08g2543 . 3 351 E2F-DP Transcription Factor Family AT3G48160 54.5 1.2e-91 334.7
Sed07g1209 . 79 282 E2F-DP Transcription Factor Family AT5G02470 54.6 3.2e-59 226.5
Sed13g0318 . 79 284 E2F-DP Transcription Factor Family AT5G02470 54.1 1.0e-57 221.5
Sed01g3208 . 17 429 E2F-DP Transcription Factor Family AT2G36010 54.8 6.8e-115 412.1
Sed14g0279 . 22 432 E2F-DP Transcription Factor Family AT2G36010 55.9 1.7e-113 407.5
Sed14g0280 . 22 432 E2F-DP Transcription Factor Family AT2G36010 55.9 1.7e-113 407.5
Sed14g0281 . 22 432 E2F-DP Transcription Factor Family AT2G36010 55.9 1.7e-113 407.5
Sed01g3208 . 9 422 E2F-DP Transcription Factor Family AT5G22220 56.5 3.7e-110 396.4
Sed03g1691 . 164 353 E2F-DP Transcription Factor Family AT5G22220 57.4 9.3e-53 205.7
Sed03g1691 . 160 417 E2F-DP Transcription Factor Family AT1G47870 54.3 7.4e-67 252.3
Sed07g1209 . 79 282 E2F-DP Transcription Factor Family AT5G02470 54.6 3.2e-59 226.5
Sed13g0318 . 79 284 E2F-DP Transcription Factor Family AT5G02470 54.1 1.0e-57 221.5
Sed01g3208 . 9 422 E2F-DP Transcription Factor Family AT5G22220 56.5 3.7e-110 396.4
Sed03g1691 . 164 353 E2F-DP Transcription Factor Family AT5G22220 57.4 9.3e-53 205.7
Sed01g3208 . 17 429 E2F-DP Transcription Factor Family AT2G36010 54.8 6.8e-115 412.1
Sed14g0279 . 22 432 E2F-DP Transcription Factor Family AT2G36010 55.9 1.7e-113 407.5
Sed14g0280 . 22 432 E2F-DP Transcription Factor Family AT2G36010 55.9 1.7e-113 407.5
Sed14g0281 . 22 432 E2F-DP Transcription Factor Family AT2G36010 55.9 1.7e-113 407.5
Sed03g1691 . 160 417 E2F-DP Transcription Factor Family AT1G47870 54.3 7.4e-67 252.3
Sed08g2542 . 3 374 E2F-DP Transcription Factor Family AT3G48160 54.4 4.2e-102 369.4
Sed01g1687 . 3 366 E2F-DP Transcription Factor Family AT3G48160 55.5 1.4e-100 364.4
Sed08g2541 . 3 351 E2F-DP Transcription Factor Family AT3G48160 54.5 1.2e-91 334.7
Sed08g2543 . 3 351 E2F-DP Transcription Factor Family AT3G48160 54.5 1.2e-91 334.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001341 2 8 2 2 1 2 3 2 2 2 2 2 2 2 2 3 2 4 3 2 2 1 2 2 2 2 2 5 4 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39451 PF02319 E2F_TDP 3.60E-20 CL0123 Sed TF