Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2543 ATGGCTGCGCTTCCATCTTCCTCTGCTTTACCGGATTCCTCCTCTTCCAGGCACCATGCTTACAGTCGGAAGCAGAAATCCCTAGGTCTTTTATGCTCCAATTTTTTGAGCTTGTATAACCACGACGGAGTTCACTCGATTGGGCTTGATGATGCTGCCTCGCGATTAGGTGTTGAAAGACGGCGGATCTATGATATTGTTAATGTATTGGAGAGCGTTGGGGTTCTGGCGAGAAAAGCGAAGAATCAGTATAGTTGGAATGGGTTTGGAGCAATCCCTAAGGCATTGCAAGATCTTAAGGAAGAGGGATTGAAGGAGAATTGCAATGCTTCTGATGGTAACGATTATGCAAAAGTCTCGGACGATGAAGATGACGATGAAAGATTTTCAAATCCAACAGGAAGTCAGAACTCAACTGCCACCATGCCCAAATCTTCATCTTTAAAAGCCGACAATAGAAGGGAAAAGTCATTGGCGCTTCTGACTCAGAATTTTGTTAAGTTATTTATATGCAGTCATCTGAATATGATTTCCCTCGATGAAGCTGCAAGGCTCTTACTAGGAGATGGCCACAACTCATCAATAATGAGAACAAAGGTGAGGCGGCTATATGACATTGCGAATGTGCTATCTTCTATGAATCTAATCGAGAAGACTCATACAGCTGACACAAGGAAGCCTGCGTTTAGGTGGTTGGGAGTGAGGGGTAAAGTCAAGAATGAGCCTACTGTTCTTCCAGAGTCCAGAAAAAGGGTATTTGGAACTGACGTTACAAATGTTAGTAACAAGAAAGTTAAGGTTGGAAATTCAGCCTATCAGAGTTTAAACCATTGCCTCGACAACCAAAAGCTTGTGCGGTGCGAGAATTCTTCCCAAGAGGATAGCCAAAACAGCCAGGATCAGGAATGCGAACGAACGTCCAAGAGCTATCAATTTGGACCATTTGCTCCTGTAACAGTAGCGAAAGTTGGCATCTCAGACAATAACAATGTGAAGCAGACTCACGATTGGGAAAGCCTTTCCTCAACATTTCGCCCTCAGTATCACAACCAAGGTAAAGCCCCTAATTAA 1071 43.7 MAALPSSSALPDSSSSRHHAYSRKQKSLGLLCSNFLSLYNHDGVHSIGLDDAASRLGVERRRIYDIVNVLESVGVLARKAKNQYSWNGFGAIPKALQDLKEEGLKENCNASDGNDYAKVSDDEDDDERFSNPTGSQNSTATMPKSSSLKADNRREKSLALLTQNFVKLFICSHLNMISLDEAARLLLGDGHNSSIMRTKVRRLYDIANVLSSMNLIEKTHTADTRKPAFRWLGVRGKVKNEPTVLPESRKRVFGTDVTNVSNKKVKVGNSAYQSLNHCLDNQKLVRCENSSQEDSQNSQDQECERTSKSYQFGPFAPVTVAKVGISDNNNVKQTHDWESLSSTFRPQYHNQGKAPN 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 38087592 38090553 - Sed0027046.2 Sed08g2543 724319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2543 356 MobiDBLite consensus disorder prediction 289 308 - -
Sed08g2543 356 Gene3D - 18 91 IPR036388 -
Sed08g2543 356 Gene3D - 148 235 IPR036388 -
Sed08g2543 356 MobiDBLite consensus disorder prediction 334 356 - -
Sed08g2543 356 FunFam E2F transcription factor-like E2FE 148 235 - -
Sed08g2543 356 Pfam E2F/DP family winged-helix DNA-binding domain 154 233 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Sed08g2543 356 Pfam E2F/DP family winged-helix DNA-binding domain 24 88 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Sed08g2543 356 SMART E2F_TDP_2 153 233 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Sed08g2543 356 SMART E2F_TDP_2 23 88 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Sed08g2543 356 FunFam E2F transcription factor 8 18 90 - -
Sed08g2543 356 SUPERFAMILY Winged helix DNA-binding domain 155 234 IPR036390 -
Sed08g2543 356 PANTHER TRANSCRIPTION FACTOR E2F 9 350 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0090575(PANTHER)
Sed08g2543 356 MobiDBLite consensus disorder prediction 106 150 - -
Sed08g2543 356 MobiDBLite consensus disorder prediction 131 147 - -
Sed08g2543 356 SUPERFAMILY Winged helix DNA-binding domain 22 86 IPR036390 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2541 Sed-Chr8:38087135 Sed08g2543 Sed-Chr8:38087592 6.20E-198 dispersed
Sed08g2543 Sed-Chr8:38087592 Sed14g0279 Sed-Chr14:2893542 2.20E-09 dispersed
Sed08g2542 Sed-Chr8:38087592 Sed08g2543 Sed-Chr8:38087592 7.30E-197 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39452 PF02319 E2F_TDP 3.20E-20 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2543 K09391 - csv:101219210 639.802