Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2543 ATGGCTGCGCTTCCATCTTCCTCTGCTTTACCGGATTCCTCCTCTTCCAGGCACCATGCTTACAGTCGGAAGCAGAAATCCCTAGGTCTTTTATGCTCCAATTTTTTGAGCTTGTATAACCACGACGGAGTTCACTCGATTGGGCTTGATGATGCTGCCTCGCGATTAGGTGTTGAAAGACGGCGGATCTATGATATTGTTAATGTATTGGAGAGCGTTGGGGTTCTGGCGAGAAAAGCGAAGAATCAGTATAGTTGGAATGGGTTTGGAGCAATCCCTAAGGCATTGCAAGATCTTAAGGAAGAGGGATTGAAGGAGAATTGCAATGCTTCTGATGGTAACGATTATGCAAAAGTCTCGGACGATGAAGATGACGATGAAAGATTTTCAAATCCAACAGGAAGTCAGAACTCAACTGCCACCATGCCCAAATCTTCATCTTTAAAAGCCGACAATAGAAGGGAAAAGTCATTGGCGCTTCTGACTCAGAATTTTGTTAAGTTATTTATATGCAGTCATCTGAATATGATTTCCCTCGATGAAGCTGCAAGGCTCTTACTAGGAGATGGCCACAACTCATCAATAATGAGAACAAAGGTGAGGCGGCTATATGACATTGCGAATGTGCTATCTTCTATGAATCTAATCGAGAAGACTCATACAGCTGACACAAGGAAGCCTGCGTTTAGGTGGTTGGGAGTGAGGGGTAAAGTCAAGAATGAGCCTACTGTTCTTCCAGAGTCCAGAAAAAGGGTATTTGGAACTGACGTTACAAATGTTAGTAACAAGAAAGTTAAGGTTGGAAATTCAGCCTATCAGAGTTTAAACCATTGCCTCGACAACCAAAAGCTTGTGCGGTGCGAGAATTCTTCCCAAGAGGATAGCCAAAACAGCCAGGATCAGGAATGCGAACGAACGTCCAAGAGCTATCAATTTGGACCATTTGCTCCTGTAACAGTAGCGAAAGTTGGCATCTCAGACAATAACAATGTGAAGCAGACTCACGATTGGGAAAGCCTTTCCTCAACATTTCGCCCTCAGTATCACAACCAAGGTAAAGCCCCTAATTAA 1071 43.7 MAALPSSSALPDSSSSRHHAYSRKQKSLGLLCSNFLSLYNHDGVHSIGLDDAASRLGVERRRIYDIVNVLESVGVLARKAKNQYSWNGFGAIPKALQDLKEEGLKENCNASDGNDYAKVSDDEDDDERFSNPTGSQNSTATMPKSSSLKADNRREKSLALLTQNFVKLFICSHLNMISLDEAARLLLGDGHNSSIMRTKVRRLYDIANVLSSMNLIEKTHTADTRKPAFRWLGVRGKVKNEPTVLPESRKRVFGTDVTNVSNKKVKVGNSAYQSLNHCLDNQKLVRCENSSQEDSQNSQDQECERTSKSYQFGPFAPVTVAKVGISDNNNVKQTHDWESLSSTFRPQYHNQGKAPN 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 38087592 38090553 - Sed0027046.2 Sed08g2543 724319

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2543 356 MobiDBLite consensus disorder prediction 289 308 - -
Sed08g2543 356 Gene3D - 18 91 IPR036388 -
Sed08g2543 356 Gene3D - 148 235 IPR036388 -
Sed08g2543 356 MobiDBLite consensus disorder prediction 334 356 - -
Sed08g2543 356 FunFam E2F transcription factor-like E2FE 148 235 - -
Sed08g2543 356 Pfam E2F/DP family winged-helix DNA-binding domain 154 233 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Sed08g2543 356 Pfam E2F/DP family winged-helix DNA-binding domain 24 88 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Sed08g2543 356 SMART E2F_TDP_2 153 233 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Sed08g2543 356 SMART E2F_TDP_2 23 88 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Sed08g2543 356 FunFam E2F transcription factor 8 18 90 - -
Sed08g2543 356 SUPERFAMILY Winged helix DNA-binding domain 155 234 IPR036390 -
Sed08g2543 356 PANTHER TRANSCRIPTION FACTOR E2F 9 350 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0090575(PANTHER)
Sed08g2543 356 MobiDBLite consensus disorder prediction 106 150 - -
Sed08g2543 356 MobiDBLite consensus disorder prediction 131 147 - -
Sed08g2543 356 SUPERFAMILY Winged helix DNA-binding domain 22 86 IPR036390 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2543 K09391 - - csv:101219210 639.802
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2541 Sed-Chr8:38087135 Sed08g2543 Sed-Chr8:38087592 6.20E-198 dispersed
Sed08g2543 Sed-Chr8:38087592 Sed14g0279 Sed-Chr14:2893542 2.20E-09 dispersed
Sed08g2542 Sed-Chr8:38087592 Sed08g2543 Sed-Chr8:38087592 7.30E-197 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g400 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed08g2543 . . . . . . . . Bhi08g01449 Tan05g2045 . . . . . . . . . . . . . . . .
Vvi17g681 Blo04g00746 Blo16g00207 . . . Bpe13g00264 Bma06g00196 . Cmo13g00935 Cmo18g00114 Cma10g00152 . Car10g00143 . Sed08g0171 Cpe20g00223 . Bhi02g00386 Tan09g2196 Cmetu02g0961 . Hepe09g0165 . . Cla06g01632 Cam06g1815 Cec06g1865 Cco06g1871 Clacu06g1773 Cmu06g1715 Cre06g2535 . Cone16ag0131 . . Lsi02g00346 Csa01g00818 Chy12g01298 Cme12g01723 . . . Bda14g00825 . . Bma03g00799 . Sed08g2543 Cmo10g00164 . Cma13g00908 Cma18g00144 Car13g00748 Car18g00138 Cpe09g01047 Cpe18g00824 Bhi08g01449 Tan05g2045 . . . . . Cla01g01399 Cam01g1461 Cec01g1502 . Clacu01g1485 Cmu01g1380 Cre01g1296 Lsi06g01514 Csa01g00185 Chy02g02548 Cme02g01934
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed08g2542 . 3 374 E2F-DP Transcription Factor Family AT3G48160 54.4 4.2e-102 369.4
Sed01g1687 . 3 366 E2F-DP Transcription Factor Family AT3G48160 55.5 1.4e-100 364.4
Sed08g2541 . 3 351 E2F-DP Transcription Factor Family AT3G48160 54.5 1.2e-91 334.7
Sed08g2543 . 3 351 E2F-DP Transcription Factor Family AT3G48160 54.5 1.2e-91 334.7
Sed07g1209 . 79 282 E2F-DP Transcription Factor Family AT5G02470 54.6 3.2e-59 226.5
Sed13g0318 . 79 284 E2F-DP Transcription Factor Family AT5G02470 54.1 1.0e-57 221.5
Sed01g3208 . 17 429 E2F-DP Transcription Factor Family AT2G36010 54.8 6.8e-115 412.1
Sed14g0279 . 22 432 E2F-DP Transcription Factor Family AT2G36010 55.9 1.7e-113 407.5
Sed14g0280 . 22 432 E2F-DP Transcription Factor Family AT2G36010 55.9 1.7e-113 407.5
Sed14g0281 . 22 432 E2F-DP Transcription Factor Family AT2G36010 55.9 1.7e-113 407.5
Sed01g3208 . 9 422 E2F-DP Transcription Factor Family AT5G22220 56.5 3.7e-110 396.4
Sed03g1691 . 164 353 E2F-DP Transcription Factor Family AT5G22220 57.4 9.3e-53 205.7
Sed03g1691 . 160 417 E2F-DP Transcription Factor Family AT1G47870 54.3 7.4e-67 252.3
Sed07g1209 . 79 282 E2F-DP Transcription Factor Family AT5G02470 54.6 3.2e-59 226.5
Sed13g0318 . 79 284 E2F-DP Transcription Factor Family AT5G02470 54.1 1.0e-57 221.5
Sed01g3208 . 9 422 E2F-DP Transcription Factor Family AT5G22220 56.5 3.7e-110 396.4
Sed03g1691 . 164 353 E2F-DP Transcription Factor Family AT5G22220 57.4 9.3e-53 205.7
Sed01g3208 . 17 429 E2F-DP Transcription Factor Family AT2G36010 54.8 6.8e-115 412.1
Sed14g0279 . 22 432 E2F-DP Transcription Factor Family AT2G36010 55.9 1.7e-113 407.5
Sed14g0280 . 22 432 E2F-DP Transcription Factor Family AT2G36010 55.9 1.7e-113 407.5
Sed14g0281 . 22 432 E2F-DP Transcription Factor Family AT2G36010 55.9 1.7e-113 407.5
Sed03g1691 . 160 417 E2F-DP Transcription Factor Family AT1G47870 54.3 7.4e-67 252.3
Sed08g2542 . 3 374 E2F-DP Transcription Factor Family AT3G48160 54.4 4.2e-102 369.4
Sed01g1687 . 3 366 E2F-DP Transcription Factor Family AT3G48160 55.5 1.4e-100 364.4
Sed08g2541 . 3 351 E2F-DP Transcription Factor Family AT3G48160 54.5 1.2e-91 334.7
Sed08g2543 . 3 351 E2F-DP Transcription Factor Family AT3G48160 54.5 1.2e-91 334.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001341 2 8 2 2 1 2 3 2 2 2 2 2 2 2 2 3 2 4 3 2 2 1 2 2 2 2 2 5 4 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39452 PF02319 E2F_TDP 3.20E-20 CL0123 Sed TF