Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2553 ATGTCTTCTCTCTTAGAACTAGAAAACTCATCTTCCAATATTTTCATACCTGAAGAATGGTCTGAGGCTGCAGAGTCCATAGTTTTTTATTCTCCAACTTCTCCACCTCCTGTTGTTCTTATCTGTGGTGCCAAAAACTGTGGCAAAAGTACTTTCTCACGCCACCTTCTCAATGTTTTCCTTCAAAGGTATAAAAAAGTGGTTTATCTGGATTCAGATGTTGGCCAGCCTGAGTTTACTCCACCAGGTTTTCTGTCCCTCACCGTGGTTGACAAACAAACTCCAGATTTGTCGACTCCATGTCTAAAGACGCCAGAGAGATCTTTTTTCTTTGGTGATATTTCTTCAAAAAGAGATCCAACAGCATATTTAAGTTATGCAAGTAGCTTGTACGATTATTACTGCCAAGAGTACCATTCTTTCAACAAGACCAAAGAGCTTGCAAAGATTGAATTGCCTCTTATCGTAAATACACCTGGATGGGTTAAAGGTATCGGCTATGAGATATTGGTAGATATGTTAAGGTACATTGCTCCATCACATGTTGTCAAAATAAATATATCTGCTGAGAGTAAGAACCTTCCGGCTGGCGAATTTTGGCTAGAAGAGGAGGAAGATTGCGGACCAACCAATCTAATAGAAATGCGTTCTGCTCGGCAAGATGCATTTAATAGATCTATACTAGTACAAAAGGATGCAGGTCTCATGCGAGATTTGCGTATAATGGCTTATTTTAGGCAGTGCTTTCCTAAAGATTGCAATATTACCACAATTAAAGAGCTTGCTCATGCACTGGCATCTCACCCTCCTTATCAAGTTCCAATGTCAAGCATTAAGATTAGACACCTGCACTGTCAGGTCCCAAGCGATCAGATCTTCTATAGTCTGAATGCGACAATCGTTGGCTTAGCCAGTTGCTCCAAAAATTCTGAAAATCTTTCATGGTGTGTTGGTCTTGGAATTGTTAGAGGCATTGATACCTCTAAAGGTCTGCTGTATGTTATCACACCCGTCCCCCATGGCACTTTGGAAAAGGTTGACCTTTTTTTGCAGGGTTATATCCAAATCCCTTCCTGTTTGTTGCAGGTTAAGGGATGCATATCACCTTACATGTGTGCAAACATTCTGCCCTCGAGCTAG 1140 40.96 MSSLLELENSSSNIFIPEEWSEAAESIVFYSPTSPPPVVLICGAKNCGKSTFSRHLLNVFLQRYKKVVYLDSDVGQPEFTPPGFLSLTVVDKQTPDLSTPCLKTPERSFFFGDISSKRDPTAYLSYASSLYDYYCQEYHSFNKTKELAKIELPLIVNTPGWVKGIGYEILVDMLRYIAPSHVVKINISAESKNLPAGEFWLEEEEDCGPTNLIEMRSARQDAFNRSILVQKDAGLMRDLRIMAYFRQCFPKDCNITTIKELAHALASHPPYQVPMSSIKIRHLHCQVPSDQIFYSLNATIVGLASCSKNSENLSWCVGLGIVRGIDTSKGLLYVITPVPHGTLEKVDLFLQGYIQIPSCLLQVKGCISPYMCANILPSS 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 38131938 38134865 + Sed0009281.1 Sed08g2553 724329

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2553 379 Gene3D - 13 249 IPR027417 -
Sed08g2553 379 FunFam Nucleolar protein 9 17 249 - -
Sed08g2553 379 PANTHER CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P 11 373 IPR045116 GO:0000448(PANTHER)|GO:0005634(PANTHER)|GO:0006396(InterPro)|GO:0006396(PANTHER)|GO:0051731(PANTHER)|GO:0051731(InterPro)
Sed08g2553 379 Pfam mRNA cleavage and polyadenylation factor CLP1 P-loop 43 193 IPR032319 -
Sed08g2553 379 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 108 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2553 K06947 - - csv:101217238 691.419
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0190 Sed-Chr3:1173089 Sed08g2553 Sed-Chr8:38131938 2.30E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g466 . . . . . . . . . Cmo18g00109 . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00338 Csa01g00809 . . . . . . . . . . Sed08g2553 . . . Cma18g00139 . . . . Bhi08g01437 Tan05g2057 Cmetu12g0118 Lac10g0399 Hepe07g2264 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011454 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 3 31