Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2559 ATGGCTTCCATTTTCAGAGAGCCGAAGAAGAAAACCACCGCAAATTCCGACGGAAAGGGGCTCGTCGGAAATATTCCGGCGACGATATCGGAGCTTTTGATATCCAGAAGCTCTACACTCGCAATGATCGCGTTCGCCTGGAACATCATCCGTCAATACTGCCCTAAAAGCCTCCGCCAATATCTCCAAAGGTATTTAAGCGAGTTCATCGATTACATCTATCCTAGTCCGTACATTCAAATCGCAGTCTACGAATTCGTCGGCGTCAATCGAAGCAGAGCCTTCGAGGCGGTTGAATCTTACCTGAGCACTAAGATTTTCGACGGCGTAAATCGACTCAAAGCCGAGATCGGAACCAAGAACAACCTCTCGCTGAGTATGGATGAGTACGAAACGGTTACCGATAAGTACGAAAACGCCAAATTCTGGTGGAGTTTCGCCAAAAACACTGGATCGACGATAAGGAGATCCATAGATCCAGTTCGGAGATGTTATCTACTTGAATTTCACAAGAAGCATCGAAACCTAGTAGTGAAATCGTATCTGAAGCATGTGTTGAAGAGAGGAAGAGAAATGAGAGTGAATCGAAGGCAGAGAAAGCTGTATACTAATGGCGATCGGTATCTGAGTTACGCAAAATGGAGCGAAGTAAACTTCGAGCATCCTGCAAATTTCGACACAATCGGCATGGATCCAGAGAAAAAGAAAGAAATCATTGAAGATCTACTCACATTTAGTCAAAGCAAGAGTTACTATGCTCGAATCAGCAAGATGTGGAAACGAGGTTACCTTCTGTACGGTCCTCCAGGGACGGGGAAATCAACGATGATCGCCGCCATGGCTAATTTGCTGAAATACGACGTTTACGATCTGGAACTAACGGCGGTGAAGGACAATATAGAGCTTCGGAAACTTCTAATTGAGACTACGAGTAAGTCGATAATCGTGATCGAAGACATCGATTGTTCACTGGAACTCACAGGCAAGAGGTTGGTGAAGAAAGAAATTGAAGATCCAAAAAGCAATGTGACTCTGTCTGGATTGCTGAATTTCCTCGACGGAATTTGGTCGGCGTGCGGCGGAGAGAGGCTGATCGTTTTCACAACAAATCACATGGAGAAGCTTGATCCGGCTTTGATTCGAAGCGGTCGAATGGATAAACACATAGAGCTTTCTTATTGCAGTTTTGAAGCGTTCAAATTACTGGCTAAGAATTACTTGAATCTTGAAACGCATCAGCTATTTGAGGAGATTGAAGTTCTTATCAAAGAAGCAAAAATAACGCCCGCGGATGTTGCAGAGAATCTCATGCCAAAAGCACGGCAAGAAGTGGCGGAGAATTCGCTCCGGCGGTTGATTCAGAGCCTGGAGGAGATGAAGAAAGCGAAAACAAAGATGGAGAAATAA 1407 44.78 MASIFREPKKKTTANSDGKGLVGNIPATISELLISRSSTLAMIAFAWNIIRQYCPKSLRQYLQRYLSEFIDYIYPSPYIQIAVYEFVGVNRSRAFEAVESYLSTKIFDGVNRLKAEIGTKNNLSLSMDEYETVTDKYENAKFWWSFAKNTGSTIRRSIDPVRRCYLLEFHKKHRNLVVKSYLKHVLKRGREMRVNRRQRKLYTNGDRYLSYAKWSEVNFEHPANFDTIGMDPEKKKEIIEDLLTFSQSKSYYARISKMWKRGYLLYGPPGTGKSTMIAAMANLLKYDVYDLELTAVKDNIELRKLLIETTSKSIIVIEDIDCSLELTGKRLVKKEIEDPKSNVTLSGLLNFLDGIWSACGGERLIVFTTNHMEKLDPALIRSGRMDKHIELSYCSFEAFKLLAKNYLNLETHQLFEEIEVLIKEAKITPADVAENLMPKARQEVAENSLRRLIQSLEEMKKAKTKMEK 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 38158495 38160543 + Sed0023121.1 Sed08g2559 724335

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2559 468 Coils Coil 442 462 - -
Sed08g2559 468 Pfam Domain associated at C-terminal with AAA 55 147 IPR025753 -
Sed08g2559 468 Pfam ATPase family associated with various cellular activities (AAA) 263 392 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Sed08g2559 468 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 121 446 IPR027417 -
Sed08g2559 468 Gene3D - 211 389 IPR027417 -
Sed08g2559 468 PANTHER BCS1 AAA-TYPE ATPASE 41 460 IPR050747 -
Sed08g2559 468 CDD RecA-like_BCS1 238 391 - -
Sed08g2559 468 Gene3D - 390 461 - -
Sed08g2559 468 ProSitePatterns AAA-protein family signature. 363 381 IPR003960 GO:0005524(InterPro)|GO:0016887(InterPro)
Sed08g2559 468 SMART AAA_5 259 395 IPR003593 GO:0016887(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2559 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1845 Sed-Chr1:13591806 Sed08g2559 Sed-Chr8:38158495 2.10E-178 dispersed
Sed08g2559 Sed-Chr8:38158495 Sed10g0940 Sed-Chr10:7587977 7.80E-92 dispersed
Sed08g2558 Sed-Chr8:38152118 Sed08g2559 Sed-Chr8:38158495 1.40E-142 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g477 . . . . . . . . Cmo13g00944 . . . . . . Cpe20g00212 . . . . . . . . . . . . . . . . . . . Lsi02g00331 Csa01g00805 Chy12g01312 Cme12g01737 . . . . . . . . Sed08g2559 . . Cma13g00919 Cma18g00135 Car13g00758 Car18g00127 Cpe09g01057 . Bhi08g01431 Tan05g2065 Cmetu12g1057 Lac10g0394 Hepe07g2269 . . Cla01g01413 Cam01g1479 Cec01g1518 Cco01g1564 Clacu01g1502 Cmu01g1395 Cre01g1315 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013815 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 0 1 0 1 1 1 1 1 1 1 2 1 2 1 0 25