Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2562 ATGAACATTTCTGATCCTGCCTGTTCTTCCCTTATCAAATCCATTGTCTGTGCGAGGTGTGATCCATTTTCTGGCGATCTATACAAAGACAATTCGACGCCTAGGCCTGTGCCTCTTCTCTGCAACTCCACTTCAGAAAATTCGCCTCAATCCAACCAAGCAGCTACTGATTTCTGCTCTACTGTATGGGATACATGCCAAAATGTGACCATAGCCAACTCCCCTTTTGCCCCTTCATTACACAGTCGAGGTGGTGCACCTGCTAACTCCAGTACTAGCAAGCTCTCCGATCTCTGGCTATCGAAAACCGACTTTTGCAATGCATTTGGTGGTGCATCCACCGAAGAATCGGTCTGCTTTGTTGGCGAACCGGTTGCCCTTAACAATACTGAACTTCCTAGCCCTCCTCCAAATGGATTATGCCTTGAGAAAATTGGAAATGGATCCTACTTGAATATGGTGGTTCATCCGGATGGATCTAATCGTGCATTCTTCTCTGACCAAGCGGGCAAGGTTTGGTTAGCAACTATTCCCGAGATGGGGTCGGGAGGAGTGTTGGGGCTGGATGAATCTAAACCATTTGTAGATTTAACTGATGTAGTTAACTTAGATACTCAATTTGGCATGATGGGCCTTGCATTTCATCCCAACTTTGCACAAAACGGAAGGTTCTTTGCTTCTTTCAATTGTGACAAGGTTAAGTGGCCAGGGTGCTCTGGAAGGTGTTCTTGTAATTCTGATGTTAACTGTGATCCTTCGAAACTACCACCTGATAGCGGATCCCAACCGTGTCAGCACCAAAGTGTTGTCGCCGAGTACACCGTTAACGGTAGTGCATCCCAGCCTTCATTGGCAACAACTGCAAAACCATCAGAAGTTAGAAGAATAATTACGATTGGTCTTCCATTTACCGCTCATCATGGAGGACAGATACTGTTTGGGCAAGATGGTTACCTTTATTTTATGATGGGAGATGGTGGCATGCAAGGCGATCCTTACAATTTTTCTCAGAACAAGAAGTCATTGCTTGGAAAGATTATGAGGTTTGATATCAATAACATTCCAAGTTCAGAAGATATTGATAAACTTGATCTATGGGGAAACTATTCTATTCCTAAAGACAACCCATTTGTTGAAGATCAAAGTGCACTGCCAGAGATATGGGCTTATGGATTTAGAAATCCTTGGCGCTGCAGTTTCGATTCTGAAAGACCTTCCTACTTCATGTGTGGAGATGTCGGACAGGATCATTTTGAAGAGGTGGACATCGTCACGAAGGGTGGAAACTACGGCTGGCGTGTTTACGAGGGTCCTCTTTTGTTTGTTCCAAATTCAGCCCCTGGAGGATCCACACCTGCAGATTCCATAAACCCAATCTTCCCAGTGATGGGCTACAATCATTCTGCAATAAGCAAGAGTGTAGGTTCTGCATCAATAACAGGAGGTTATTTCTATCGATCTAAGACTGATCCGTGTATGTACGGAAGGTACTTGTTTGGAGATTTGTATGCTTCTGCCATTTGGGCAGGAACTGAAAATCCAAAAAACAGTGGGAACTTTACCACAAATGAGATTTCTTTCAGTTGTACCCCTGATTCTCCTATACCTTGCAGTACCACCCCAGAAACCCCTCTTCCAGCTTTGGGTTATGTTTTCTCATTTGGAGAAGACAATGACAAGGACATTTACATTCTAACCAGCAGTGGAGTCTACAGGATCGTCCCGCCTAGTCGTTGTAAATACGCTTGCCCGTTGGAAAACGTAACAACAGTCGGAAGCTCCGGACCGACGTCGCCCCCTCCATCTCGTGCAAGTCGGTTGACGAACTCATGTAGCAGCCTGGTGCTCCTACTCACTTATGTGCTGCTGCTGCTTATGAATTGCAGCTGA 1890 45.13 MNISDPACSSLIKSIVCARCDPFSGDLYKDNSTPRPVPLLCNSTSENSPQSNQAATDFCSTVWDTCQNVTIANSPFAPSLHSRGGAPANSSTSKLSDLWLSKTDFCNAFGGASTEESVCFVGEPVALNNTELPSPPPNGLCLEKIGNGSYLNMVVHPDGSNRAFFSDQAGKVWLATIPEMGSGGVLGLDESKPFVDLTDVVNLDTQFGMMGLAFHPNFAQNGRFFASFNCDKVKWPGCSGRCSCNSDVNCDPSKLPPDSGSQPCQHQSVVAEYTVNGSASQPSLATTAKPSEVRRIITIGLPFTAHHGGQILFGQDGYLYFMMGDGGMQGDPYNFSQNKKSLLGKIMRFDINNIPSSEDIDKLDLWGNYSIPKDNPFVEDQSALPEIWAYGFRNPWRCSFDSERPSYFMCGDVGQDHFEEVDIVTKGGNYGWRVYEGPLLFVPNSAPGGSTPADSINPIFPVMGYNHSAISKSVGSASITGGYFYRSKTDPCMYGRYLFGDLYASAIWAGTENPKNSGNFTTNEISFSCTPDSPIPCSTTPETPLPALGYVFSFGEDNDKDIYILTSSGVYRIVPPSRCKYACPLENVTTVGSSGPTSPPPSRASRLTNSCSSLVLLLTYVLLLLMNCS 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 38161265 38165752 - Sed0017543.3 Sed08g2562 724338

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2562 629 PANTHER HEDGEHOG-INTERACTING PROTEIN 4 620 - -
Sed08g2562 629 FunFam HHIP-like 1 144 568 - -
Sed08g2562 629 SUPERFAMILY Soluble quinoprotein glucose dehydrogenase 125 471 IPR011041 -
Sed08g2562 629 Gene3D - 145 569 IPR011042 -
Sed08g2562 629 Pfam Glucose / Sorbosone dehydrogenase 162 507 IPR012938 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2562 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1844 Sed-Chr1:13565470 Sed08g2562 Sed-Chr8:38161265 0.00E+00 dispersed
Sed08g2560 Sed-Chr8:38161265 Sed08g2562 Sed-Chr8:38161265 0.00E+00 dispersed
Sed08g2561 Sed-Chr8:38161265 Sed08g2562 Sed-Chr8:38161265 1.40E-305 tandem
Sed08g2562 Sed-Chr8:38161265 Sed08g2563 Sed-Chr8:38161265 1.20E-305 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g479 . . . . . Bpe13g00269 Bma06g00190 . Cmo13g00945 Cmo18g00105 . . . . . Cpe20g00036 . . . . . . . . . . . . . . . Cone2ag0871 Cone16ag0139 . . Lsi02g00328 Csa01g00802 Chy12g01314 Cme12g01738 . . Bda11g01682 Bda14g00833 . Bpe15g00618 Bma03g00807 . Sed08g2562 . . Cma13g00921 Cma18g00134 Car13g00759 Car18g00126 Cpe09g01058 . Bhi08g01429 Tan05g2068 . Lac10g0392 . . . Cla01g01414 Cam01g1480 Cec01g1519 Cco01g1565 Clacu01g1503 Cmu01g1396 Cre01g1316 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003165 2 3 3 3 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 5 3 2 51