Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed08g2568 | ATGGAGGACAAGCCGGAAATGTTGGAGGCTGTGTTGAAGGAAGCTGTGGATTTGGAAAATATACCCATTGATGAGGTTTTTGAGAATTTGAGATGTAGCAAAGAGGGTCTTACCAGTGAGGCTGCTGAGGAACGGCTCAAGATTTTTGGCCACAACAAACTTGAGGAAAAGAAGGAAAGCAAAATCTTGAAGTTTTTGGGGTTTATGTGGAATCCTTTATCATGGGTTATGGAAGCTGCTGCAATTATGGCTATTGCACTTGCAAATGGAGGAGGAAAGCCTCCTGATTGGCAAGATTTTGTGGGTATCATTACCTTGCTTCTCATCAACTCCACAATCAGTTTTATTGAGGAAAACAATGCAGGAAATGCTGCAGCTGCTCTCATGGCTGGTCTTGCTCCCAAAGCCAAGGTTCTTCGAGACGGAAGGTGGAGCGAGCAGGATGCTTCTATTTTAGTTCCTGGTGATGTAATTAGCGTTAAACTTGGGGACATTATTCCTGCTGATGCACGTCTTCTGGATGGGGATCCACTAAAAATTGACCAGTCTGCTCTTACAGGTGAATCTCTCCCTGTTACTAAAGGTCCTGGTGATGGTGTTTACTCTGGTTCTACTTGTAAGCAAGGAGAGCTTGAAGCTGTGGTCATTGCTACTGGTGTCCACACCTTTTTTGGTAAAGCTGCACATCTTGTTGACACCACCAACCAAGTGGGACACTTCCAAAAGGTCTTGACTTCCATTGGGAACTTCTGCATATGTTCCATTGCAGTGGGAATGGTAATTGAGATTATTGTCATGTATCCGATTCAAGACCGTGACTATCGTCCTGGAATTGATAACCTCCTTGTTCTATTGATTGGAGGAATTCCGATAGCCATGCCTACCGTTCTCTCTGTGACAATGGCTATTGGTTCTCATAGGTTATCCCAGCAGGGTGCGATCACCAAGAGGATGACTGCTATTGAAGAAATGGCAGGCATGGATGTGCTTTGCAGTGATAAGACAGGAACCCTGACATTGAACAAGTTAACTGTTGACAAAAATCTTGTGGAGGTTTTCAGTAAAGGGATAGATGCAGACACTGTGGTTCTAATGGCTGCTCGAGCATCAAGAACAGAAAATCAGGATGCTATAGATACTGCAATTGTTGGTATGCTAGCTGATCCGAAGGAGGCGCGTGCTGGCATTCAGGAAGTACATTTCCTTCCTTTCAATCCTACCGATAAGCGGACAGCATTGACTTATATTGACCACGAGGGCAAGATGCACAGAGTCAGTAAAGGTGCTCCAGAACAGATTCTAAATCTTGCTTACAACAAGTCAGAGATTGAGAGAAGAGTGCACACAGTGATTGATAAATTTGCTGAACGAGGTTTGCGTTCACTTGCTGTAGCATACCAGGAAGTTCCTGAAGGAAGGAAAGAGAGTGCTGGAGGTCCTTGGCAATTCATGGGCCTTTTGCCTTTGTTTGACCCACCGAGGCATGACAGTGCAGAGACAATTAGGAGAGCTTTAAATCTTGGTGTAAATGTGAAAATGATTACCGGAGATCAACTGGCTATAGGAAAGGAAACGGGACGTCGATTGGGGATGGGGACGAACATGTATCCATCATCTGCTTTGCTAGGACAGGAAAAGGATGAGTCCATTGCTGCTTTACCTGTTGATGACCTTATTGAAAAAGCAGATGGTTTTGCTGGTGTATTCCCAGAGCACAAATACGAGATTGTAAAACGCTTGCAAGCTATGAAACATATCTGTGGGATGACTGGTGATGGAGTGAATGATGCTCCAGCACTTAAAAAGGCTGACATAGGTATAGCTGTTGCTGATGCAACTGATGCTGCTCGGAGTGCTTCTGATATAGTCCTTACTGAACCCGGTCTCAGTGTCATCATCAGTGCCGTTTTGACCAGTCGAGCAATATTTCAGAGGATGAAAAACTACACGATTTATGCAGTTTCCATCACAATACGTATTGTGCTTGGTTTCATGTTGCTGGCCCTCATTTGGAGATTTGATTTTCCACCATTTATGGTGCTTATCATTGCTATCCTTAATGATGGCACAATCATGACAATATCTAAGGATAGGGTTAAACCATCTCCTCTGCCAGATAGTTGGAAGCTGGCTGAAATTTTTACTACTGGCATTGTACTTGGTAGTTACTTGGCAATGATGACAGTCATATTTTTTTGGGTGTCCTATAAAACCAACTTTTTCCCTCGAGTCTTTGGGGTGCCAACCCTTGAGAAAACAGCTCATGACGACTTCCGGAAGCTAGCCTCAGCTATATATCTGCAAGTGAGCACTATCAGTCAAGCCCTCATTTTTGTTACGCGATCTCGGAGTTGGTCCTACGTTGAGCGTCCTGGGCTATTTCTTGTAGTGGCTTTTGTACTTGCTCAACTGGTTGCCACTCTGATTGCTGTCTATGCTAATTGGAGTTTTGCTGCCATTGAAGGAATTGGTTGGGGTTGGGCTGGTGTAATTTGGCTTTATAACATTGTTTTCTATATTCCTCTCGATCCAATTAAGTTTGCTATTCGATATGCTTTGAGTGGAAAGGCTTGGGATCTCATGCTTGAGCAAAGGGTTGCTTTCACAAGACAAAAGGATTTCGGTAAGGAACAACGCGAGCTGCAATGGGCTCACGCACAAAGAACGCTGCACGGTCTGCAACCACCTGATACTAAGATGTTCACTGAGCGGACTCATTTCACAGAACTCAACCACATGGCTGAAGAAGCCAAAAGGAGAGCGGAAATTGCAAGATTGAGGGAACTCCATACTCTGAAAGGTCATGTGGAATCAGTGGTTAGATTGAAGGGTCTCGATATCGAAACGATTCAACAATCATACACTGTGTAA | 2871 | 44.13 | MEDKPEMLEAVLKEAVDLENIPIDEVFENLRCSKEGLTSEAAEERLKIFGHNKLEEKKESKILKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIITLLLINSTISFIEENNAGNAAAALMAGLAPKAKVLRDGRWSEQDASILVPGDVISVKLGDIIPADARLLDGDPLKIDQSALTGESLPVTKGPGDGVYSGSTCKQGELEAVVIATGVHTFFGKAAHLVDTTNQVGHFQKVLTSIGNFCICSIAVGMVIEIIVMYPIQDRDYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLVEVFSKGIDADTVVLMAARASRTENQDAIDTAIVGMLADPKEARAGIQEVHFLPFNPTDKRTALTYIDHEGKMHRVSKGAPEQILNLAYNKSEIERRVHTVIDKFAERGLRSLAVAYQEVPEGRKESAGGPWQFMGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQEKDESIAALPVDDLIEKADGFAGVFPEHKYEIVKRLQAMKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWRFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLAEIFTTGIVLGSYLAMMTVIFFWVSYKTNFFPRVFGVPTLEKTAHDDFRKLASAIYLQVSTISQALIFVTRSRSWSYVERPGLFLVVAFVLAQLVATLIAVYANWSFAAIEGIGWGWAGVIWLYNIVFYIPLDPIKFAIRYALSGKAWDLMLEQRVAFTRQKDFGKEQRELQWAHAQRTLHGLQPPDTKMFTERTHFTELNHMAEEAKRRAEIARLRELHTLKGHVESVVRLKGLDIETIQQSYTV | 956 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 38206175 | 38212094 | + | Sed0012088.1 | Sed08g2568 | 724344 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed08g2568 | 956 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 333 | 339 | IPR018303 | - | |
| Sed08g2568 | 956 | PRINTS | H+-transporting ATPase (proton pump) signature | 766 | 787 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed08g2568 | 956 | PRINTS | H+-transporting ATPase (proton pump) signature | 590 | 606 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed08g2568 | 956 | PRINTS | H+-transporting ATPase (proton pump) signature | 621 | 646 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed08g2568 | 956 | PRINTS | H+-transporting ATPase (proton pump) signature | 447 | 465 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed08g2568 | 956 | PRINTS | H+-transporting ATPase (proton pump) signature | 562 | 578 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed08g2568 | 956 | SUPERFAMILY | Calcium ATPase, transduction domain A | 134 | 231 | IPR008250 | - | |
| Sed08g2568 | 956 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 17 | 853 | IPR023298 | - | |
| Sed08g2568 | 956 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 19 | 904 | - | GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER) | |
| Sed08g2568 | 956 | Gene3D | - | 343 | 490 | IPR023299 | GO:0000166(InterPro) | |
| Sed08g2568 | 956 | FunFam | Plasma membrane ATPase | 134 | 218 | - | - | |
| Sed08g2568 | 956 | FunFam | ATPase 4 plasma membrane-type | 584 | 821 | - | - | |
| Sed08g2568 | 956 | Pfam | haloacid dehalogenase-like hydrolase | 327 | 604 | - | - | |
| Sed08g2568 | 956 | NCBIfam | HAD-IC family P-type ATPase | 565 | 679 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed08g2568 | 956 | NCBIfam | HAD-IC family P-type ATPase | 103 | 350 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed08g2568 | 956 | SMART | Cation_ATPase_N_a_2 | 17 | 89 | IPR004014 | - | |
| Sed08g2568 | 956 | Gene3D | - | 328 | 627 | IPR023214 | - | |
| Sed08g2568 | 956 | CDD | P-type_ATPase_H | 36 | 847 | IPR006534 | GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro) | |
| Sed08g2568 | 956 | Pfam | E1-E2 ATPase | 133 | 310 | - | - | |
| Sed08g2568 | 956 | SUPERFAMILY | HAD-like | 327 | 637 | IPR036412 | - | |
| Sed08g2568 | 956 | Gene3D | - | 96 | 821 | - | - | |
| Sed08g2568 | 956 | SFLD | p-type atpase | 313 | 641 | IPR044492 | - | |
| Sed08g2568 | 956 | Gene3D | - | 905 | 956 | - | - | |
| Sed08g2568 | 956 | FunFam | Plasma membrane ATPase | 484 | 638 | - | - | |
| Sed08g2568 | 956 | Pfam | Cation transporter/ATPase, N-terminus | 20 | 83 | IPR004014 | - | |
| Sed08g2568 | 956 | FunFam | Plasma membrane ATPase | 343 | 490 | - | - | |
| Sed08g2568 | 956 | NCBIfam | plasma-membrane proton-efflux P-type ATPase | 36 | 812 | IPR006534 | GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro) | |
| Sed08g2568 | 956 | SFLD | C1.7: P-type atpase like | 313 | 641 | - | - | |
| Sed08g2568 | 956 | PRINTS | P-type cation-transporting ATPase superfamily signature | 331 | 345 | - | - | |
| Sed08g2568 | 956 | PRINTS | P-type cation-transporting ATPase superfamily signature | 590 | 609 | - | - | |
| Sed08g2568 | 956 | PRINTS | P-type cation-transporting ATPase superfamily signature | 613 | 625 | - | - | |
| Sed08g2568 | 956 | PRINTS | P-type cation-transporting ATPase superfamily signature | 181 | 195 | - | - | |
| Sed08g2568 | 956 | PRINTS | P-type cation-transporting ATPase superfamily signature | 485 | 496 | - | - | |
| Sed08g2568 | 956 | PRINTS | P-type cation-transporting ATPase superfamily signature | 507 | 517 | - | - | |
| Sed08g2568 | 956 | Gene3D | - | 134 | 218 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed08g0193 | Sed-Chr8:1079970 | Sed08g2568 | Sed-Chr8:38206175 | 0.00E+00 | dispersed | |
| Sed08g0194 | Sed-Chr8:1079970 | Sed08g2568 | Sed-Chr8:38206175 | 0.00E+00 | dispersed | |
| Sed08g2568 | Sed-Chr8:38206175 | Sed11g1984 | Sed-Chr11:34039862 | 0.00E+00 | dispersed | |
| Sed01g1839 | Sed-Chr1:13525684 | Sed08g2568 | Sed-Chr8:38206175 | 0.00E+00 | wgd | |
| Sed08g0192 | Sed-Chr8:1079970 | Sed08g2568 | Sed-Chr8:38206175 | 0.00E+00 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed08g2568 | K01535 | - | csv:101214920 | 1774.6 |