Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2570 ATGTGCAACAAAATTCAAATGGGTTTGTTCGTTTTTGCTTTCTCATCGCTTTTACTGTCGACCCTTTTCAGCTCTCCCACTCTTGCTCTTACCCCAGATGGCTTAGCGTTGTTGGAAATTAGAAGGGGTTTTAATGATAGTAAGAACCTCCTTGGTGATTGGGAAGCTTCTGATGAGTCTCCCTGCAAATGGACTGGTATCTCTTGTCACCCTGAGGATCAACGTGTCAGCTCAATTAACTTACCTTACATGCAACTAGGAGGGATTATTTCTCCCAGCATTGGTAAACTCAGTAGGTTACAGAGACTGGCACTTCACCAAAATGGCTTACATGGATATATTTCTAATGAAATCACTAAATGTACTCAGCTCAGAGCTCTGTATTTGAGGTCTAATTATCTCCAAGGTGGCATACCATCGGATATTGGAAGCCTTTCTGCTCTTACAGTACTGGATTTATCAAGCAATTCGTTGAAGGGTGCTATTCCATCATCCATTGGACGTCTTTCACTTTTGCGCCATTTGAATTTGTCCACCAACTTTTTTTCTGGGGAAATTCCAGATTTCGGAATTCTTAGCACTTTTGGAAGCAATTCGTTCGTTGGCAATCTAGATCTTTGTGGTCATCAAGTTAACAAGGCCTGCCAAACCTCATTGGGATTCCCTGCAGTGTTGCCCCATGCTGAAAGTGATGAAACTTCTGTGCCTGTGAAAAGACCTTCACACTACATCAAAGGAGTAATAATTGGTGCAATGTCCACAATGGGTGTTGCACTTGTAGTGCTTGTTCCATTTTTGTGGATCCGGTGGCTATCAAAGAAGGAAAGAGCTGCCAAGAGATACAGTGAAGTCAAAAAGCAAGTGGTTCATGAACCAAACACAAAACTTATCACTTTTCACGGTGACCTGCCATATCCATCATGTGAGATCATAGAAAAGCTGGAGTCACTAGACGAAGAAGATGTTGTCGGTTCAGGAGGATTTGGAATTGTATACCGAATGGTCATGAATGATTGTGGAACATTTGCTGTTAAAAAGATTGATGGAAGCAGGAAAGGTTCAGACCAAGTATTTGAGAGAGAGTTGGAGATTTTGGGTTGCATCAAACATATAAACTTGGTCAATTTGCGTGGATATTGTAGTCTTCCAACTTCAAAGCTTCTTATCTATGACTTTCTTGCAATGGGCAGCCTCGATGATTTCTTGCATGAACAGCAACCAGGAAAACAGCCTTTGGACTGGAGAGCTCGTTTAAGGATAGCCTTGGGCTCCGCTAGGGCGATTGCATACTTGCATCATGATTGTTGTCCAAAGATCGTGCATCGTGATATTAAATCGAGTAACATTCTACTTGATGAAAACTTAGAGCCCCATGTATCCGACTTTGGACTCGCCAAGCTTTTGGTTGATGAGGATGCTCATGTCACAACTGTTGTTGCTGGAACATTTGGTTATTTGGCTCCAGAATACTTACAAAGTGGGAGAGCAACTGAAAAAGCAGATGTTTACAGCTTTGGAGTTTTGTTACTGGAGCTAGTGACTGGGAGAAGACCAACTGATCCATCATTTGTGAAGCGAGGCTTAAATGTTGTTGGTTGGATGCACACATTATTGGGAGAAAGCAAAATGGATGAGATAGTTGACAAAAAGTGCAAGGACGTTGATGCCGATACTGTAGAAGCAATTCTTGAAATAGCAGGCAAATGCACGGATGCTGACCCGGACAGTCGGCCATCCATGAGTCAAGTTTTGCAGTTTCTAGAGCAAGAAGTCATGTCACCATATCCTAGTGATTTCTACGAGTCTCATTCTGATTATTCTTGA 1824 42.16 MCNKIQMGLFVFAFSSLLLSTLFSSPTLALTPDGLALLEIRRGFNDSKNLLGDWEASDESPCKWTGISCHPEDQRVSSINLPYMQLGGIISPSIGKLSRLQRLALHQNGLHGYISNEITKCTQLRALYLRSNYLQGGIPSDIGSLSALTVLDLSSNSLKGAIPSSIGRLSLLRHLNLSTNFFSGEIPDFGILSTFGSNSFVGNLDLCGHQVNKACQTSLGFPAVLPHAESDETSVPVKRPSHYIKGVIIGAMSTMGVALVVLVPFLWIRWLSKKERAAKRYSEVKKQVVHEPNTKLITFHGDLPYPSCEIIEKLESLDEEDVVGSGGFGIVYRMVMNDCGTFAVKKIDGSRKGSDQVFERELEILGCIKHINLVNLRGYCSLPTSKLLIYDFLAMGSLDDFLHEQQPGKQPLDWRARLRIALGSARAIAYLHHDCCPKIVHRDIKSSNILLDENLEPHVSDFGLAKLLVDEDAHVTTVVAGTFGYLAPEYLQSGRATEKADVYSFGVLLLELVTGRRPTDPSFVKRGLNVVGWMHTLLGESKMDEIVDKKCKDVDADTVEAILEIAGKCTDADPDSRPSMSQVLQFLEQEVMSPYPSDFYESHSDYS 607
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 38220240 38224180 + Sed0004741.1 Sed08g2570 724346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2570 607 ProSitePatterns Protein kinases ATP-binding region signature. 323 346 IPR017441 GO:0005524(InterPro)
Sed08g2570 607 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 187 590 IPR050647 -
Sed08g2570 607 Pfam Leucine Rich Repeat 148 169 IPR001611 GO:0005515(InterPro)
Sed08g2570 607 Pfam Leucine Rich Repeat 123 145 IPR001611 GO:0005515(InterPro)
Sed08g2570 607 Pfam Leucine Rich Repeat 172 188 IPR001611 GO:0005515(InterPro)
Sed08g2570 607 SUPERFAMILY L domain-like 32 210 - -
Sed08g2570 607 Pfam Protein kinase domain 320 585 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g2570 607 Gene3D Transferase(Phosphotransferase) domain 1 393 597 - -
Sed08g2570 607 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 393 598 - -
Sed08g2570 607 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 30 192 - -
Sed08g2570 607 ProSiteProfiles Protein kinase domain profile. 317 592 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g2570 607 Gene3D Phosphorylase Kinase; domain 1 275 392 - -
Sed08g2570 607 ProSitePatterns Serine/Threonine protein kinases active-site signature. 439 451 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g2570 607 Gene3D Ribonuclease Inhibitor 32 217 IPR032675 -
Sed08g2570 607 Pfam Leucine rich repeat N-terminal domain 32 69 IPR013210 -
Sed08g2570 607 SMART serkin_6 317 592 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g2570 607 SUPERFAMILY Protein kinase-like (PK-like) 299 588 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1838 Sed-Chr1:13513366 Sed08g2570 Sed-Chr8:38220240 5.70E-210 dispersed
Sed05g1798 Sed-Chr5:31590989 Sed08g2570 Sed-Chr8:38220240 7.70E-65 dispersed
Sed07g0947 Sed-Chr7:6925062 Sed08g2570 Sed-Chr8:38220240 9.50E-127 dispersed
Sed07g0948 Sed-Chr7:6925062 Sed08g2570 Sed-Chr8:38220240 9.50E-127 dispersed
Sed08g2570 Sed-Chr8:38220240 Sed12g1930 Sed-Chr12:30428441 6.20E-166 dispersed
Sed06g1062 Sed-Chr6:17703873 Sed08g2570 Sed-Chr8:38220240 8.10E-121 transposed
Sed01g1837 Sed-Chr1:13513366 Sed08g2570 Sed-Chr8:38220240 3.10E-274 wgd
Sed12g1929 Sed-Chr12:30428441 Sed08g2570 Sed-Chr8:38220240 9.10E-218 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79712 PF00069 Pkinase 2.10E-46 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2570 - - - 0.0