Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed08g2579 | ATGGAGGCTGCTCCAGCTTTTCGTCGCCCGGTCAAGACCGAGAGCCCCGCCCGAGATGGCGACGGGAACGGGGACGGGAATTCTCCCTCAACGAAACATCCTCTCGTCAAGATGGGGAATAGTTGTGGAAAACAAGAGCTTGAAACTGATGATAAAACAAGCACCTCATCTAATCACAAGGATTTAAGTTGCACCAAACTTCAGGGAGGCGAACTGGAATCGGCCCGAGCGGAAATGGGAGAAGTGAGAGAAGAAAACGAGAGACTAAAAATAAGTTTAAATAAAATGATGAAAGATTACGAAGCTCTAAGAACGCAATACCTCGGCATGGTCGGAGGAGAAGCCAATAATAAATCGCCGGAAAAGGCCGACGACGAAACGGAGCTCATTTCGCTGACGCTGGGGAGGTTTCCGGCGACAGAGAAGAACAAGAAATCGGAACAGAGAAACGAAGAAGGAGTAAAGGAATGTCTATCTCTTGGATTGAGCTGCAAATTCGACGCCAAATCGACGGCGGCCGTTAAAGAAGGCGGCGATTCGCCGAATCGGAGCTTGACGAATAGTTGTGATCGCGAGGATCAGGGAAAGGAGGAGGAGGCCGGAGAGACGAGTTGGCCGCCGAGTAAATCGGCGAAGACGATGAGGAGCGGCGAGGATGATGCTGTTGCGTCGCAGAATCCGCCCAAGCGCGCTAGGGTTTGCGTTAGGGCCCGATGCGAGACCGCTACGATGAATGATGGCTGTCAATGGAGAAAATATGGGCAAAAAATTTCAAAAGGAAACCCATGTCCACGAGCCTACTACCGGTGCACAGGCTCGGCGACATGTCCGGTTCGAAAACAAGTACAACGATGTGCGGACGACATGTCGGTTTTAGTCACAACCTACGAAGGCAATCACAACCACCAATTACCAGTGTCTGCAACCGCCATGGCCTCCACCACCTCCGCCGCCGCCTCCATGCTCCTCTCCGGCTCCTCCACTTCCGCTGCTGCCGCCGCCAATCTCAACGGCCATAACTACTACCTCTCTTCCAACAACCCAACAAATTCCAAACCTAACTTTTATTTACCAAATAACCCCTCAAACATTTCATCCACTCCCCCAACTCACCCTACAATTACTCTAGATCTCACTTCAAATCCCTCGACCCATTTTGGTAAATTTGCTTCCACTACTTTTAACAATTCTCGGTACCCTTTTACAAGTCAGCTCGATTTTGGCTCTTCAAGGAATAATGTGCTGTCGTGGAATAACGGTCTTGTTAGTTACAATAACAGAAATAACAACCTTTCCACAACCACCAATAATATCTACCAAAATTACATCCAACAACAAAGGAATAGTAATCTTAATAATAATCATCATAATGTGGCTGCTGCTGCCCCGTCATTGTCACATCAGCAGCAGCAGCAGCCTTTGCCCGACACGATCGCTGCTGCCACGAAAGCCATCACGACCGACCCAAGCTTTCAGTCTGCTCTCGTTGCTGCTCTTACGTCGATCATTGGTACTGGTAGTAGAGGTCATGACGGTGTGATTAAGTCATCCATGACGACAAACTGTGAACAACCCTTATTTCAGTTGGCGTCGACAATGGTGACGAATAAAGGAAATGGATGTGGGACGAGCGTTTTGAGCAATGCTGCGGTGGCAACGGGGACGGGGACCGCGAATAATTCTACAGCAGGGACTGTGGTGTTTGTTTCAGAGAGTTCGTTGCCGTTTTCGAAACCGAAGAGCATGTCTGTGTCACTTGAGGATCATATTGATCTCACCAATTGA | 1785 | 49.13 | MEAAPAFRRPVKTESPARDGDGNGDGNSPSTKHPLVKMGNSCGKQELETDDKTSTSSNHKDLSCTKLQGGELESARAEMGEVREENERLKISLNKMMKDYEALRTQYLGMVGGEANNKSPEKADDETELISLTLGRFPATEKNKKSEQRNEEGVKECLSLGLSCKFDAKSTAAVKEGGDSPNRSLTNSCDREDQGKEEEAGETSWPPSKSAKTMRSGEDDAVASQNPPKRARVCVRARCETATMNDGCQWRKYGQKISKGNPCPRAYYRCTGSATCPVRKQVQRCADDMSVLVTTYEGNHNHQLPVSATAMASTTSAAASMLLSGSSTSAAAAANLNGHNYYLSSNNPTNSKPNFYLPNNPSNISSTPPTHPTITLDLTSNPSTHFGKFASTTFNNSRYPFTSQLDFGSSRNNVLSWNNGLVSYNNRNNNLSTTTNNIYQNYIQQQRNSNLNNNHHNVAAAAPSLSHQQQQQPLPDTIAAATKAITTDPSFQSALVAALTSIIGTGSRGHDGVIKSSMTTNCEQPLFQLASTMVTNKGNGCGTSVLSNAAVATGTGTANNSTAGTVVFVSESSLPFSKPKSMSVSLEDHIDLTN | 594 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 38266746 | 38272183 | + | Sed0019570.1 | Sed08g2579 | 724355 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed08g2579 | 594 | MobiDBLite | consensus disorder prediction | 173 | 227 | - | - | |
Sed08g2579 | 594 | SMART | WRKY_cls | 244 | 304 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed08g2579 | 594 | Coils | Coil | 72 | 106 | - | - | |
Sed08g2579 | 594 | SUPERFAMILY | WRKY DNA-binding domain | 237 | 305 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed08g2579 | 594 | MobiDBLite | consensus disorder prediction | 189 | 203 | - | - | |
Sed08g2579 | 594 | Gene3D | WRKY domain | 229 | 306 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed08g2579 | 594 | ProSiteProfiles | WRKY domain profile. | 239 | 305 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed08g2579 | 594 | PANTHER | WRKY TRANSCRIPTION FACTOR 36-RELATED | 51 | 507 | IPR044810 | GO:0003700(InterPro) | |
Sed08g2579 | 594 | Pfam | WRKY DNA -binding domain | 245 | 303 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed08g2579 | 594 | MobiDBLite | consensus disorder prediction | 1 | 83 | - | - | |
Sed08g2579 | 594 | FunFam | probable WRKY transcription factor 31 | 229 | 306 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g1828 | Sed-Chr1:13445727 | Sed08g2579 | Sed-Chr8:38266746 | 6.60E-140 | dispersed | |
Sed08g2579 | Sed-Chr8:38266746 | Sed13g0515 | Sed-Chr13:3508628 | 1.20E-41 | dispersed | |
Sed01g1827 | Sed-Chr1:13445727 | Sed08g2579 | Sed-Chr8:38266746 | 9.70E-145 | wgd | |
Sed12g1936 | Sed-Chr12:30465888 | Sed08g2579 | Sed-Chr8:38266746 | 1.60E-80 | wgd | |
Sed08g0199 | Sed-Chr8:1129753 | Sed08g2579 | Sed-Chr8:38266746 | 5.40E-78 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39456 | PF03106 | WRKY | 7.50E-23 | CL0274 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed08g2579 | - | - | - | 0.0 |