Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2579 ATGGAGGCTGCTCCAGCTTTTCGTCGCCCGGTCAAGACCGAGAGCCCCGCCCGAGATGGCGACGGGAACGGGGACGGGAATTCTCCCTCAACGAAACATCCTCTCGTCAAGATGGGGAATAGTTGTGGAAAACAAGAGCTTGAAACTGATGATAAAACAAGCACCTCATCTAATCACAAGGATTTAAGTTGCACCAAACTTCAGGGAGGCGAACTGGAATCGGCCCGAGCGGAAATGGGAGAAGTGAGAGAAGAAAACGAGAGACTAAAAATAAGTTTAAATAAAATGATGAAAGATTACGAAGCTCTAAGAACGCAATACCTCGGCATGGTCGGAGGAGAAGCCAATAATAAATCGCCGGAAAAGGCCGACGACGAAACGGAGCTCATTTCGCTGACGCTGGGGAGGTTTCCGGCGACAGAGAAGAACAAGAAATCGGAACAGAGAAACGAAGAAGGAGTAAAGGAATGTCTATCTCTTGGATTGAGCTGCAAATTCGACGCCAAATCGACGGCGGCCGTTAAAGAAGGCGGCGATTCGCCGAATCGGAGCTTGACGAATAGTTGTGATCGCGAGGATCAGGGAAAGGAGGAGGAGGCCGGAGAGACGAGTTGGCCGCCGAGTAAATCGGCGAAGACGATGAGGAGCGGCGAGGATGATGCTGTTGCGTCGCAGAATCCGCCCAAGCGCGCTAGGGTTTGCGTTAGGGCCCGATGCGAGACCGCTACGATGAATGATGGCTGTCAATGGAGAAAATATGGGCAAAAAATTTCAAAAGGAAACCCATGTCCACGAGCCTACTACCGGTGCACAGGCTCGGCGACATGTCCGGTTCGAAAACAAGTACAACGATGTGCGGACGACATGTCGGTTTTAGTCACAACCTACGAAGGCAATCACAACCACCAATTACCAGTGTCTGCAACCGCCATGGCCTCCACCACCTCCGCCGCCGCCTCCATGCTCCTCTCCGGCTCCTCCACTTCCGCTGCTGCCGCCGCCAATCTCAACGGCCATAACTACTACCTCTCTTCCAACAACCCAACAAATTCCAAACCTAACTTTTATTTACCAAATAACCCCTCAAACATTTCATCCACTCCCCCAACTCACCCTACAATTACTCTAGATCTCACTTCAAATCCCTCGACCCATTTTGGTAAATTTGCTTCCACTACTTTTAACAATTCTCGGTACCCTTTTACAAGTCAGCTCGATTTTGGCTCTTCAAGGAATAATGTGCTGTCGTGGAATAACGGTCTTGTTAGTTACAATAACAGAAATAACAACCTTTCCACAACCACCAATAATATCTACCAAAATTACATCCAACAACAAAGGAATAGTAATCTTAATAATAATCATCATAATGTGGCTGCTGCTGCCCCGTCATTGTCACATCAGCAGCAGCAGCAGCCTTTGCCCGACACGATCGCTGCTGCCACGAAAGCCATCACGACCGACCCAAGCTTTCAGTCTGCTCTCGTTGCTGCTCTTACGTCGATCATTGGTACTGGTAGTAGAGGTCATGACGGTGTGATTAAGTCATCCATGACGACAAACTGTGAACAACCCTTATTTCAGTTGGCGTCGACAATGGTGACGAATAAAGGAAATGGATGTGGGACGAGCGTTTTGAGCAATGCTGCGGTGGCAACGGGGACGGGGACCGCGAATAATTCTACAGCAGGGACTGTGGTGTTTGTTTCAGAGAGTTCGTTGCCGTTTTCGAAACCGAAGAGCATGTCTGTGTCACTTGAGGATCATATTGATCTCACCAATTGA 1785 49.13 MEAAPAFRRPVKTESPARDGDGNGDGNSPSTKHPLVKMGNSCGKQELETDDKTSTSSNHKDLSCTKLQGGELESARAEMGEVREENERLKISLNKMMKDYEALRTQYLGMVGGEANNKSPEKADDETELISLTLGRFPATEKNKKSEQRNEEGVKECLSLGLSCKFDAKSTAAVKEGGDSPNRSLTNSCDREDQGKEEEAGETSWPPSKSAKTMRSGEDDAVASQNPPKRARVCVRARCETATMNDGCQWRKYGQKISKGNPCPRAYYRCTGSATCPVRKQVQRCADDMSVLVTTYEGNHNHQLPVSATAMASTTSAAASMLLSGSSTSAAAAANLNGHNYYLSSNNPTNSKPNFYLPNNPSNISSTPPTHPTITLDLTSNPSTHFGKFASTTFNNSRYPFTSQLDFGSSRNNVLSWNNGLVSYNNRNNNLSTTTNNIYQNYIQQQRNSNLNNNHHNVAAAAPSLSHQQQQQPLPDTIAAATKAITTDPSFQSALVAALTSIIGTGSRGHDGVIKSSMTTNCEQPLFQLASTMVTNKGNGCGTSVLSNAAVATGTGTANNSTAGTVVFVSESSLPFSKPKSMSVSLEDHIDLTN 594
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 38266746 38272183 + Sed0019570.1 Sed08g2579 724355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2579 594 MobiDBLite consensus disorder prediction 173 227 - -
Sed08g2579 594 SMART WRKY_cls 244 304 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed08g2579 594 Coils Coil 72 106 - -
Sed08g2579 594 SUPERFAMILY WRKY DNA-binding domain 237 305 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed08g2579 594 MobiDBLite consensus disorder prediction 189 203 - -
Sed08g2579 594 Gene3D WRKY domain 229 306 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed08g2579 594 ProSiteProfiles WRKY domain profile. 239 305 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed08g2579 594 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 51 507 IPR044810 GO:0003700(InterPro)
Sed08g2579 594 Pfam WRKY DNA -binding domain 245 303 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed08g2579 594 MobiDBLite consensus disorder prediction 1 83 - -
Sed08g2579 594 FunFam probable WRKY transcription factor 31 229 306 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1828 Sed-Chr1:13445727 Sed08g2579 Sed-Chr8:38266746 6.60E-140 dispersed
Sed08g2579 Sed-Chr8:38266746 Sed13g0515 Sed-Chr13:3508628 1.20E-41 dispersed
Sed01g1827 Sed-Chr1:13445727 Sed08g2579 Sed-Chr8:38266746 9.70E-145 wgd
Sed12g1936 Sed-Chr12:30465888 Sed08g2579 Sed-Chr8:38266746 1.60E-80 wgd
Sed08g0199 Sed-Chr8:1129753 Sed08g2579 Sed-Chr8:38266746 5.40E-78 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39456 PF03106 WRKY 7.50E-23 CL0274 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2579 - - - 0.0