Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2583 ATGGGGAAGTCGCCGGGGAAATGGATTAAGACGATCTTGTTTGGGAAGAAGTCTTCCAAATCTAATCTTTCTAAGAGCAGAGAGAAAAATGTAAATCAGAAAGAGGTATCGGTTTCTGCCAAGGCATCAGATTCTACTTCTGTTATTAGTCATCTAGTAGCTTCACAGCCAACCCTGAACTCCATTGATTCAAATGAAGCAATGTCGAAAATCACCAACAATGAGGCAGCTAACATGTCGCATGAAAGAGCGATATCAATTCCAGGAAATCAAGATGCAGAAATTCAGGGATCTACCTGCCAAGATGCACCATTTGATCCTGAGAGAATCCGTGAAGAGGAGGCTGCAACTAAGGCTCAAGCTGCTTTTAGGGGTTATTTGGCTCGACGAGCATTCCGGGCCCTCAAAGGTATTATTAGGTTGCAGGCGCTTATTCGTGGTCACTTGGTTAGGAGACAGGCTGTTGCTACTCTCTGTTGTATGCTTGGAATTGTTAAGTTTCAAGCTATTGCTCGGGGAAGAAAAGTGAGGCTTTCTGATGTAGGGTTTGAAGTGCAAAACAAATCTAGATTAGTGCAGCCACAGGAGCAATCATTAGTGGATCCTGCTGGACTTGGTCTCTCTACACGAATAGCAAAGCTTTCAGCTAACACTTTTACCATCAAGCTTGCTTCTTCTACAATTGCCAAACCTCTGCAAATCTATTTTGATAATGGAGATGAAAATTCAGCCTTGAAATGGCTAGAGCGTTGGTCAAATTCTAGATTTTGGAAACCAACTCCCCAAGTCAAAAAAGCTCCAGAGGTGAAATCCCAAAGAAGGTTGAGCACTGGTCAAACAGGAGAGGCACAGGCAATTAGATCGAAACGCACAAGGAGAGTTCCCTCAGTAAACAATGACAGTGCTGCTGTCCAATCATCTGCAGAAGTTGAGAAACCCAAACGTACATTTAGGAAAGTTTCGAGTCACTCAGTAGCCGAGCAGGTTCAGGAGAATCCTCAGATCGAGCTTGAAAAGGTCAAGCGCAGTCTGAGAAAGGTCCATAATCCTGTCCCTGTCCTTGAGAATTCTGCCCCAGCTGAAGCAGATGCTGAGAAGCCCAAGGAAAGTTCGGACAAGGCTTCAAATGGTCTAGGCCGCGACGTTTTGGCAAGAGGTACTAGTAATTCTTCTGAGAAGATGAAAAAAGAGGCAATCTCAATGATACCTGTCCAGCCTGAGTTAGAAACATCGACTGAGCCGGCACCGATAAGAGAGGTAGTTAATGCACCTAATGGTGATCGAGTTGCAGAATCACAGCCTTTGATTGAGAGTAGTGATAGAGATAAGAGCATTGCTGGGGATGAGGTTGCTGTGGAAACTAAGCCTTTGACAGAGTACTACCCTAACGATGAGACCAGCCCATTATCGAACGGGGAATCAAACCACAAGGAAAATTGTGCGAACAACGAGAATCCAAAATCTGGGAGGAAAGCCTCTACTCCAGCCAAGCACGAGCGAGTGGAGAATGGGTTGCAACATAGTCCAACCGTACCTAGCTACATGGCAGCAACTGAATCTGCAAAGGCAAAACTGAGAGCACAAGGATCACCTAGACTTGGACAGGAAAGTGATAAAAATAACCTCAATCGACGACATTCCTTACCGTCGCCCACTAATGCTAAAATTAGCTCGCAGTCTCCACGAACACAAAGACTTGTTCAAGCAGGTGGCAAAGGAGGAATTAAAAATGACAAGGCGCTTCTGGGATCAAGAGATGGAAATGGAAAGGTAATCCAAGCAGACTGGAGAAGGTAA 1797 44.96 MGKSPGKWIKTILFGKKSSKSNLSKSREKNVNQKEVSVSAKASDSTSVISHLVASQPTLNSIDSNEAMSKITNNEAANMSHERAISIPGNQDAEIQGSTCQDAPFDPERIREEEAATKAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVATLCCMLGIVKFQAIARGRKVRLSDVGFEVQNKSRLVQPQEQSLVDPAGLGLSTRIAKLSANTFTIKLASSTIAKPLQIYFDNGDENSALKWLERWSNSRFWKPTPQVKKAPEVKSQRRLSTGQTGEAQAIRSKRTRRVPSVNNDSAAVQSSAEVEKPKRTFRKVSSHSVAEQVQENPQIELEKVKRSLRKVHNPVPVLENSAPAEADAEKPKESSDKASNGLGRDVLARGTSNSSEKMKKEAISMIPVQPELETSTEPAPIREVVNAPNGDRVAESQPLIESSDRDKSIAGDEVAVETKPLTEYYPNDETSPLSNGESNHKENCANNENPKSGRKASTPAKHERVENGLQHSPTVPSYMAATESAKAKLRAQGSPRLGQESDKNNLNRRHSLPSPTNAKISSQSPRTQRLVQAGGKGGIKNDKALLGSRDGNGKVIQADWRR 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 38277946 38283691 + Sed0016857.4 Sed08g2583 724359

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2583 598 MobiDBLite consensus disorder prediction 262 331 - -
Sed08g2583 598 MobiDBLite consensus disorder prediction 19 40 - -
Sed08g2583 598 MobiDBLite consensus disorder prediction 361 375 - -
Sed08g2583 598 Gene3D - 110 158 - -
Sed08g2583 598 ProSiteProfiles IQ motif profile. 136 158 - -
Sed08g2583 598 MobiDBLite consensus disorder prediction 434 449 - -
Sed08g2583 598 MobiDBLite consensus disorder prediction 544 566 - -
Sed08g2583 598 PANTHER IQ-DOMAIN 5-RELATED 6 566 - -
Sed08g2583 598 SMART iq_5 134 155 IPR000048 GO:0005515(InterPro)
Sed08g2583 598 SMART iq_5 111 133 IPR000048 GO:0005515(InterPro)
Sed08g2583 598 MobiDBLite consensus disorder prediction 348 598 - -
Sed08g2583 598 ProSiteProfiles IQ motif profile. 112 140 - -
Sed08g2583 598 Pfam Protein of unknown function (DUF4005) 484 574 IPR025064 -
Sed08g2583 598 MobiDBLite consensus disorder prediction 272 306 - -
Sed08g2583 598 Pfam IQ calmodulin-binding motif 136 153 IPR000048 GO:0005515(InterPro)
Sed08g2583 598 Pfam IQ calmodulin-binding motif 114 133 IPR000048 GO:0005515(InterPro)
Sed08g2583 598 MobiDBLite consensus disorder prediction 460 490 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2583 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2581 Sed-Chr8:38277946 Sed08g2583 Sed-Chr8:38277946 0.00E+00 dispersed
Sed08g2583 Sed-Chr8:38277946 Sed13g1870 Sed-Chr13:23712252 7.10E-13 dispersed
Sed08g2582 Sed-Chr8:38277946 Sed08g2583 Sed-Chr8:38277946 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g521 Blo04g00761 Blo16g00193 . . . . . . Cmo13g00963 Cmo18g00095 . . . . . Cpe20g00197 . . . . . . . . . . . . . . . Cone2ag0858 Cone16ag0154 . . . Csa01g00786 . Cme12g01757 . . Bda11g01691 . . . . . Sed08g2583 . . Cma13g00933 Cma18g00123 Car13g00773 Car18g00113 Cpe09g01069 . Bhi08g01405 Tan05g2090 Cmetu12g0772 . . . . Cla01g01430 Cam01g1498 Cec01g1538 Cco01g1583 Clacu01g1521 Cmu01g1413 Cre01g1331 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008895 1 3 2 1 1 1 2 0 1 0 0 0 2 1 1 2 0 2 1 0 1 1 1 1 1 0 1 4 0 3 34