Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2597 ATGCCGCCGAGACGTTATGCTGTTGGAAGGGCCGATGAGGCGACCCACCCCGACTCCATTCGAGCCACCTTGGCCGAGTTCGTTTCCACTTTCATCTTCGTCTTTGCCGGCGAAGGCTCCGTCCTTGCTCTAGACAAAATTTTCAGGCCAGCGGATCATGGAAGTTATGGTCATGGAGGCTACGGTTATGATCATGGTTACCGTCATCATGACCATGTTTACGGCTGGAGGGGAGGCGACAAGGGCCGAGGAGCGTCGGATTTAGTAGTAATAGCAGTAGCGCATGCATTTGCGCTGTTCTCGGCGGTAGCAGCAAGTATCAACATCTCTGGTGGGCATGTGAATCCTGCTGTAACATTTGGTGCACTTCTTGGTGGCAGGATCTCTCTTATCCGTGCATTATTCTATTGGGTTGCTCAGATCTTGGGAGCCATTGCCGCTTCACTTCTCCTGAGACTCGCCACCGGTGGCATGAGGCCTATGGGATTCTTCGTTTCATCAGGGATATCAGAAATGCACGGATTTCTTCTAGAGGTAGTGCTTACATTCGCTTTGGCGTACACAGTCTACGCAACAGCAATAGATCCAAAGAGGGGCAGTTTGGGAATAATAGCACCACTGGCAATCGGGTTGATCGTCGGGGCAAATATTCTGGTGGGTGGGGCATTTGATGGGGCATGCATGAACCCGGCCCGAGCATTTGGGCCGTCGTTAGTGGGCTGGAGATGGGACAACCATTGGATCTACTGGATCGGCCCATTAGTGGGAGGTGGGCTTGCTGCTCTCGTCTATGAGTACCTGATCATTCCAGTCGAACCTCCTCTACATACCCACCACCAGCCTTTAGCTCCTGAAGATTACTAA 864 52.31 MPPRRYAVGRADEATHPDSIRATLAEFVSTFIFVFAGEGSVLALDKIFRPADHGSYGHGGYGYDHGYRHHDHVYGWRGGDKGRGASDLVVIAVAHAFALFSAVAASINISGGHVNPAVTFGALLGGRISLIRALFYWVAQILGAIAASLLLRLATGGMRPMGFFVSSGISEMHGFLLEVVLTFALAYTVYATAIDPKRGSLGIIAPLAIGLIVGANILVGGAFDGACMNPARAFGPSLVGWRWDNHWIYWIGPLVGGGLAALVYEYLIIPVEPPLHTHHQPLAPEDY 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 38329220 38331040 + Sed0027711.1 Sed08g2597 724373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2597 287 FunFam Probable aquaporin TIP1-1 76 282 - -
Sed08g2597 287 Gene3D Glycerol uptake facilitator protein. 5 273 IPR023271 -
Sed08g2597 287 CDD MIP 21 267 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed08g2597 287 PANTHER AQUAPORIN-8 5 276 IPR034294 GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
Sed08g2597 287 SUPERFAMILY Aquaporin-like 13 276 IPR023271 -
Sed08g2597 287 ProSitePatterns MIP family signature. 113 121 IPR022357 -
Sed08g2597 287 NCBIfam MIP family channel protein 25 264 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed08g2597 287 Pfam Major intrinsic protein 14 264 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed08g2597 287 PRINTS Major intrinsic protein family signature 177 195 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed08g2597 287 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed08g2597 287 PRINTS Major intrinsic protein family signature 132 151 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed08g2597 287 PRINTS Major intrinsic protein family signature 210 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed08g2597 287 PRINTS Major intrinsic protein family signature 247 267 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2597 Sed-Chr8:38329220 Sed14g0365 Sed-Chr14:3816260 4.40E-77 dispersed
Sed01g1813 Sed-Chr1:13270408 Sed08g2597 Sed-Chr8:38329220 9.90E-143 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2597 K09873 - csv:101208863 474.167