Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2609 ATGCGAGAAATCCTTCACATCCAGGGCGGCCAATGCGGAAACCAGATCGGCGCTAAGTTCTGGGAGGTGATTTGCGACGAACATGGCATTGACCACTCCGGCAAGTACTCCGGCGACTCCGAGCTTCAGCTCGAGCGGATCAACGTCTATTACAACGAGGCCAGTGGCGGCAGGTTCGTTCCTCGAGCCGTTCTTATGGATCTCGAGCCTGGAACTATGGATTCCGTCAGATCTGGTCCCTATGGCCAGATCTTCCGCCCCGACAACTTCGTTTTTGGTCAGTCTGGGGCTGGGAACAATTGGGCCAAAGGACATTACACTGAAGGTGCTGAGCTTATCGATTCTGTTCTCGACGTTGTCAGGAAGGAGGCTGAGAATTGTGATTGCTTGCAAGGATTCCAAGTTTGCCATTCTTTGGGTGGAGGTACTGGTTCTGGAATGGGAACACTTCTGATTTCGAAGATCAGGGAGGAGTACCCTGATCGCATGATGTTGACATTTTCTGTATTTCCTTCTCCGAAGGTTTCAGATACAGTTGTAGAACCATACAATGCCACTTTGTCTGTTCATCAGCTTGTCGAGAATGCTGATGAATGCATGGTTCTTGACAATGAAGCCCTTTATGATATTTGCTTCCGAACACTCAAGCTTGCTACTCCAACATTTGGCGATCTCAACCACCTTATCTCTGCCACCATGAGTGGTGTTACTTGTTGTCTACGATTCCCTGGGCAATTGAACTCTGATCTGCGAAAGCTTGCTGTCAATCTCATTCCATTCCCTCGTCTACACTTCTTCATGGTTGGTTTTGCACCATTAACATCAAGAGGTTCCCAGCAGTACCGAGCCCTCACAGTACCAGAGTTAACTCAGCAGATGTGGGATGCCAAAAACATGATGTGCGCCGCTGATCCACGACACGGCCGATACCTTACTGCTTCAGCCATGTTCCGTGGTAAGATGAGTACTAAAGAAGTAGACGAGCAGATGATCAATGTACAAAACAAGAATTCATCTTACTTCGTCGAATGGATACCCAACAACGTCAAGTCCAGCGTGTGTGACATCCCACCCAAGGGACTGAAGATGGCATCGACTTTCATTGGTAACTCTACCTCGATTCAGGAGATGTTCAGGAGGGTTAGTGAGCAGTTCACAGCCATGTTCAGGCGCAAGGCCTTCCTGCATTGGTACACTGGTGAAGGAATGGACGAAATGGAGTTCACCGAGGCCGAGAGTAACATGAACGACCTGGTCGCCGAGTATCAGCAGTATCAGGATGCGACTGCGGAAGAAGATTATGAAGAGGAGGAAGAAGAAGAAGCTGCTTGA 1332 48.95 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHSGKYSGDSELQLERINVYYNEASGGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATAEEDYEEEEEEEAA 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 38416771 38420201 + Sed0027140.1 Sed08g2609 724385

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2609 443 PRINTS Tubulin signature 151 172 IPR000217 GO:0005874(InterPro)|GO:0007017(InterPro)
Sed08g2609 443 PRINTS Tubulin signature 132 150 IPR000217 GO:0005874(InterPro)|GO:0007017(InterPro)
Sed08g2609 443 PRINTS Tubulin signature 51 70 IPR000217 GO:0005874(InterPro)|GO:0007017(InterPro)
Sed08g2609 443 PRINTS Tubulin signature 190 210 IPR000217 GO:0005874(InterPro)|GO:0007017(InterPro)
Sed08g2609 443 PRINTS Tubulin signature 106 130 IPR000217 GO:0005874(InterPro)|GO:0007017(InterPro)
Sed08g2609 443 PRINTS Tubulin signature 93 104 IPR000217 GO:0005874(InterPro)|GO:0007017(InterPro)
Sed08g2609 443 PRINTS Tubulin signature 176 189 IPR000217 GO:0005874(InterPro)|GO:0007017(InterPro)
Sed08g2609 443 PRINTS Tubulin signature 10 30 IPR000217 GO:0005874(InterPro)|GO:0007017(InterPro)
Sed08g2609 443 PRINTS Tubulin signature 370 398 IPR000217 GO:0005874(InterPro)|GO:0007017(InterPro)
Sed08g2609 443 Coils Coil 408 428 - -
Sed08g2609 443 FunFam Tubulin beta chain 1 262 - -
Sed08g2609 443 Gene3D Helix hairpin bin 374 430 IPR023123 -
Sed08g2609 443 Pfam Tubulin C-terminal domain 261 382 IPR018316 -
Sed08g2609 443 SMART Tubulin_4 47 244 IPR003008 GO:0005525(InterPro)
Sed08g2609 443 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 140 146 IPR017975 GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Sed08g2609 443 SUPERFAMILY Tubulin C-terminal domain-like 244 429 IPR008280 -
Sed08g2609 443 SUPERFAMILY Tubulin nucleotide-binding domain-like 1 243 IPR036525 -
Sed08g2609 443 Gene3D - 263 373 IPR037103 -
Sed08g2609 443 FunFam Tubulin beta chain 374 436 - -
Sed08g2609 443 SMART Tubulin_C_4 246 383 IPR018316 -
Sed08g2609 443 PANTHER TUBULIN 1 426 IPR000217 GO:0000226(PANTHER)|GO:0000278(PANTHER)|GO:0005200(PANTHER)|GO:0005525(PANTHER)|GO:0005737(PANTHER)|GO:0005874(InterPro)|GO:0005874(PANTHER)|GO:0007017(InterPro)
Sed08g2609 443 CDD beta_tubulin 2 426 - -
Sed08g2609 443 FunFam Tubulin beta chain 264 373 - -
Sed08g2609 443 Gene3D Tubulin/FtsZ, GTPase domain 1 262 IPR036525 -
Sed08g2609 443 PRINTS Beta-tubulin signature 88 99 IPR002453 GO:0003924(InterPro)|GO:0005200(InterPro)|GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Sed08g2609 443 PRINTS Beta-tubulin signature 412 430 IPR002453 GO:0003924(InterPro)|GO:0005200(InterPro)|GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Sed08g2609 443 PRINTS Beta-tubulin signature 245 258 IPR002453 GO:0003924(InterPro)|GO:0005200(InterPro)|GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Sed08g2609 443 PRINTS Beta-tubulin signature 265 281 IPR002453 GO:0003924(InterPro)|GO:0005200(InterPro)|GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Sed08g2609 443 PRINTS Beta-tubulin signature 329 343 IPR002453 GO:0003924(InterPro)|GO:0005200(InterPro)|GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Sed08g2609 443 PRINTS Beta-tubulin signature 152 164 IPR002453 GO:0003924(InterPro)|GO:0005200(InterPro)|GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Sed08g2609 443 PRINTS Beta-tubulin signature 230 239 IPR002453 GO:0003924(InterPro)|GO:0005200(InterPro)|GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Sed08g2609 443 PRINTS Beta-tubulin signature 41 58 IPR002453 GO:0003924(InterPro)|GO:0005200(InterPro)|GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Sed08g2609 443 PRINTS Beta-tubulin signature 212 224 IPR002453 GO:0003924(InterPro)|GO:0005200(InterPro)|GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Sed08g2609 443 PRINTS Beta-tubulin signature 108 126 IPR002453 GO:0003924(InterPro)|GO:0005200(InterPro)|GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Sed08g2609 443 PRINTS Beta-tubulin signature 377 388 IPR002453 GO:0003924(InterPro)|GO:0005200(InterPro)|GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Sed08g2609 443 PRINTS Beta-tubulin signature 347 370 IPR002453 GO:0003924(InterPro)|GO:0005200(InterPro)|GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Sed08g2609 443 PRINTS Beta-tubulin signature 311 329 IPR002453 GO:0003924(InterPro)|GO:0005200(InterPro)|GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Sed08g2609 443 Pfam Tubulin/FtsZ family, GTPase domain 3 211 IPR003008 GO:0005525(InterPro)
Sed08g2609 443 ProSitePatterns Tubulin-beta mRNA autoregulation signal. 1 4 IPR013838 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2609 K07375 - - gmx:100818878 868.996
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0780 Sed-Chr2:45482155 Sed08g2609 Sed-Chr8:38416771 6.70E-250 dispersed
Sed03g1685 Sed-Chr3:10918896 Sed08g2609 Sed-Chr8:38416771 6.70E-250 dispersed
Sed05g0796 Sed-Chr5:6253681 Sed08g2609 Sed-Chr8:38416771 5.40E-244 dispersed
Sed08g2609 Sed-Chr8:38416771 Sed11g1089 Sed-Chr11:26540563 1.00E-250 dispersed
Sed01g1888 Sed-Chr1:13979990 Sed08g2609 Sed-Chr8:38416771 3.80E-253 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1117 . . Bda01g00482 . Bpe02g00346 . Bma04g00249 . . . . . . . Sed08g2609 . Cpe07g00363 Bhi04g00145 Tan02g2079 Cmetu03g2170 . Hepe10g0157 . Lcy13g1909 Cla08g01419 Cam08g1899 Cec08g1475 Cco08g1608 Clacu08g1590 . Cre08g1374 . . . . . . . Cme03g01875 Blo17g00745 . . Bda01g01531 Bpe02g01727 . . . . . . Cma12g00406 . . . . . . . . . . . . . . . . . . . Lsi08g01314 . Chy03g01381 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000127 7 8 7 13 9 7 3 7 7 7 7 7 11 7 7 12 6 15 3 7 7 7 6 8 1 6 8 9 9 2 220