Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2620 ATGTCTTTCCTCCGACCTTACGGTAAGGTCGATGAAACCAACCAAATGTTCGAGGCTCGCCGGAGAACTCGAAAGAGGATTGCAGTCATTGTCTTGTCCTCTGTTGTTCTTGTTGGTGTTGTTCTTGGTGTTGTTTTTGGGACTAGAAATGGTTCCAAAAGTGATGACAGGAACAATCAGAATGGTGCTCTTTCAACTTCCATCAAAGCAGTTTGTGATGTGACTTTGTACCCTGATACTTGTTACAATTCTTTTGCTCCTTTCGCTAACTCGAGCCACCTTGACCCGGGACAGATCTCCAAGCTTTCGGTTCAATTAGCGCTCGGCGAACTCTCTCAAGTAGCTAACTACATTTTTGAGCATGCCATTACCAATTCAACTGACGATAAGACCATATTGGCTCTGAGTAGTTGTCATGAACTTTTGGATTTGGCAATTGATCATCTCAATATCTCATTGTCTTCTAGTGATATTACATTGCTGAAAGCTGTGGATGATTTGAAAACATGGCTAACTTCTGCAGCTACTTACCAGCAGACTTGCATCGACGATCTCGAGGATGTCGACCCGTCGTTGGCGAACATGGTTGCGAGTTACTTGAAGAAATCCACTGAATTGACCAGCAATGGTCTTGCCATTGTGACCTTCTTTTCGAACCTTACTGATTCTTTCAGTCTACGGCGGTTGATGAGTTATGAAGATCACGAAAGCAATGGAGATTGGGCGCGCCCAATACTTCGAAAGCTAGCTCAGACTGATCTCAGGAAGCAGGTTAACATTGTTGTAGCGAAAGGGGGTTCGGGAAAGTACAAAACAATCGGGGCAGCTCTGAAGGCTGTTCCTGATAAGAGCAAGAAGAGAACTGTGATCTATGTAAAGAAGGGAATTTATAATGAGAATGTTGAAGTTGGAAAGAACAAATGGAATGTGGTGATGATTGGTGATGGAATGACTTCAACCACAGTGACTGGCAGACTCAACTTCATAGATGGGACTCCAACTTTTCAAAGTGCAACATTTGCTGCAAAGGGAAAAGGCTTTATTGCTATAGACATGGGATTCAAGAACACAGCTGGACCAAGCAAACACCAGGCTGTTGCCTTAATGTCGACGTCCGATCAATCAATCTTCTACCGTTGCCAAATGGATGCATACCAAGACACTCTCTATGCACACTCCAACCGCCAATTCTACCGTGATTGCAAGGTTTTCGGCACAGTCGATTTCATCTTCGGAAACTCAGCAGTGGTCCTACAAAACTGCATCATTGCTCCCAAGTTGCCTCTTTTAGGCCAAAAGAACACAATCACTGCTCAAGGCAGGTTTGATCCTAATCAAAACACTGGCATTTCACTACAAGGATCTACGATCCAACCATATGAGAACTTGAAAACCACCGAAACTTACCTCGGTCGACCATGGAAGAACTACTCGACAACCGTGTTTGTGCAGAGTAATTTGGGAAGCTTGATTCACCCAACTGGCTGGCTGCCTTGGGTTGGAACATCAGCACCAGACACCATATTCTATGCAGAGTTTCAAAATAATGGCCCTGGTTCTTCAAAAGTTAAAAGAGTCAAATGGAAGGGAGTGAAGAACATTGACATTAAAACTGCCAAAAAGTTCACAGTTTCTTCTTTTATTCATGGTAAGGATTGGATCTCAAAAGCACAAGTCCCCTTCAAAGCCAGCCTTTGA 1698 43.7 MSFLRPYGKVDETNQMFEARRRTRKRIAVIVLSSVVLVGVVLGVVFGTRNGSKSDDRNNQNGALSTSIKAVCDVTLYPDTCYNSFAPFANSSHLDPGQISKLSVQLALGELSQVANYIFEHAITNSTDDKTILALSSCHELLDLAIDHLNISLSSSDITLLKAVDDLKTWLTSAATYQQTCIDDLEDVDPSLANMVASYLKKSTELTSNGLAIVTFFSNLTDSFSLRRLMSYEDHESNGDWARPILRKLAQTDLRKQVNIVVAKGGSGKYKTIGAALKAVPDKSKKRTVIYVKKGIYNENVEVGKNKWNVVMIGDGMTSTTVTGRLNFIDGTPTFQSATFAAKGKGFIAIDMGFKNTAGPSKHQAVALMSTSDQSIFYRCQMDAYQDTLYAHSNRQFYRDCKVFGTVDFIFGNSAVVLQNCIIAPKLPLLGQKNTITAQGRFDPNQNTGISLQGSTIQPYENLKTTETYLGRPWKNYSTTVFVQSNLGSLIHPTGWLPWVGTSAPDTIFYAEFQNNGPGSSKVKRVKWKGVKNIDIKTAKKFTVSSFIHGKDWISKAQVPFKASL 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 38465075 38467226 - Sed0000177.1 Sed08g2620 724396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2620 565 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 67 218 IPR035513 -
Sed08g2620 565 ProSitePatterns Pectinesterase signature 2. 403 412 IPR033131 -
Sed08g2620 565 SUPERFAMILY Pectin lyase-like 258 562 IPR011050 -
Sed08g2620 565 CDD PMEI-like_3 70 215 - -
Sed08g2620 565 SMART PMEI_2 63 213 IPR006501 GO:0004857(InterPro)
Sed08g2620 565 Pfam Pectinesterase 259 550 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Sed08g2620 565 Gene3D - 254 565 IPR012334 -
Sed08g2620 565 NCBIfam pectinesterase inhibitor domain 52 214 IPR006501 GO:0004857(InterPro)
Sed08g2620 565 PANTHER PECTINESTERASE 26 555 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Sed08g2620 565 Gene3D Invertase/pectin methylesterase inhibitor family protein 65 217 IPR035513 -
Sed08g2620 565 FunFam Pectinesterase 253 565 - -
Sed08g2620 565 ProSitePatterns Pectinesterase signature 1. 284 303 IPR018040 -
Sed08g2620 565 FunFam Pectinesterase 64 218 - -
Sed08g2620 565 Pfam Plant invertase/pectin methylesterase inhibitor 67 213 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0037 Sed-Chr6:219585 Sed08g2620 Sed-Chr8:38465075 1.40E-119 dispersed
Sed06g2286 Sed-Chr6:46340802 Sed08g2620 Sed-Chr8:38465075 2.60E-121 dispersed
Sed08g2620 Sed-Chr8:38465075 Sed09g0254 Sed-Chr9:2032683 9.40E-108 dispersed
Sed01g1879 Sed-Chr1:13924973 Sed08g2620 Sed-Chr8:38465075 4.90E-266 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2620 - - - 0.0