Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2623 ATGAGTAATTTTTCAGTGGATTCGAGGGGACCTGAATCAGCTAAATGTAGATTAAAGGATTTATTGCTTCACAAAGATAATCAACTTTGTGCAGATTGTGATGCTCCAGATCCTAAATGGGCCTCTGCAAATATTGGTGTGTTTATATGCTTAAAATGTAGTGGCGTGCATAGAAGCCTTGGAACACACGTATCGAAGGTCTTATCAATAACTTTGGATGAATGGTCTGATTATGAGATTGATGCGATGATAGAGGTTGGAGGAAATGGTTCTGCTAATGCAATATACGAGGCTTTTATCCCCGATGGATATACAAAGCCTGGACCAAGTGCCAGCCCCGAGGAGCGTTCAAAGTTCATTCGGTCTAAGTACGAACTTCAAGAATTTTTAAAACCTGGCTTGCGAATTGGATCCAGTGACTCCTCAAAGAGTCCTAAGGAGCCAAGTTTCTTTCAAGAGATTGCTGATAGCTTTCGAAGCTCAAACTCTTCAAAGAAATCACCACAAGAAGGCATGGTTGAATTTATGGGATTATTGAAAGTGAAGGTGATTAAAGGCACAAACTTAGCCGTGAGAGATGTGAAGTCCAGTGATACGTTCATTACCGTGACTCTTGGGCAACAGACTGCTAAAACAACGGTGGTAAATAGCGACTTGAATCCAGTTTGGAACGAGGAGCTCATGCTGTCGGTTCCTCAAGAATATGGACCCTTGAAGTTGCAAGTGTTCGACCAGGACGTTTTTTCAGCTAATGACTTAATGGGCGAAGCAGAAATTGACCTCCAGCCGATGATAACATCAGCAATGGCATGTGGAGATGCTACAACATTTGTGAATATGCAGATAGGAAAATGGTTGAAGTCAGACGACAACGCTCTCATCGACGATAGTGCTGTCAATATCGTCAACGGGACAGTGAAACAAGAGGTGTCGATCAAGCTCCAAAATGTGGAATCAGGTGAAGTTTACTTGGAACTAGAGTGGATTCCTCTTGATCAATAG 1002 42.32 MSNFSVDSRGPESAKCRLKDLLLHKDNQLCADCDAPDPKWASANIGVFICLKCSGVHRSLGTHVSKVLSITLDEWSDYEIDAMIEVGGNGSANAIYEAFIPDGYTKPGPSASPEERSKFIRSKYELQEFLKPGLRIGSSDSSKSPKEPSFFQEIADSFRSSNSSKKSPQEGMVEFMGLLKVKVIKGTNLAVRDVKSSDTFITVTLGQQTAKTTVVNSDLNPVWNEELMLSVPQEYGPLKLQVFDQDVFSANDLMGEAEIDLQPMITSAMACGDATTFVNMQIGKWLKSDDNALIDDSAVNIVNGTVKQEVSIKLQNVESGEVYLELEWIPLDQ 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 38485567 38489879 - Sed0012887.1 Sed08g2623 724399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2623 333 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 175 333 - -
Sed08g2623 333 Gene3D C2 domain 175 333 IPR035892 -
Sed08g2623 333 ProSiteProfiles C2 domain profile. 160 274 IPR000008 -
Sed08g2623 333 Pfam C2 domain 177 264 IPR000008 -
Sed08g2623 333 CDD ArfGap 18 124 - -
Sed08g2623 333 Pfam Putative GTPase activating protein for Arf 18 131 IPR001164 GO:0005096(InterPro)
Sed08g2623 333 PRINTS HIV Rev interacting protein signature 27 46 IPR001164 GO:0005096(InterPro)
Sed08g2623 333 PRINTS HIV Rev interacting protein signature 46 63 IPR001164 GO:0005096(InterPro)
Sed08g2623 333 PRINTS HIV Rev interacting protein signature 67 88 IPR001164 GO:0005096(InterPro)
Sed08g2623 333 Gene3D Arf GTPase activating protein 3 134 IPR038508 -
Sed08g2623 333 ProSiteProfiles ARF GTPase-activating proteins domain profile. 15 140 IPR001164 GO:0005096(InterPro)
Sed08g2623 333 SMART C2_3c 178 273 IPR000008 -
Sed08g2623 333 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 9 333 IPR044518 GO:0005096(InterPro)|GO:0005543(InterPro)
Sed08g2623 333 SMART arf_gap_3 15 137 IPR001164 GO:0005096(InterPro)
Sed08g2623 333 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 175 331 IPR035892 -
Sed08g2623 333 FunFam stromal membrane-associated protein 1 isoform X1 4 134 - -
Sed08g2623 333 SUPERFAMILY ArfGap/RecO-like zinc finger 18 131 IPR037278 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1870 Sed-Chr1:13889692 Sed08g2623 Sed-Chr8:38485567 3.90E-162 dispersed
Sed01g1871 Sed-Chr1:13889692 Sed08g2623 Sed-Chr8:38485567 3.90E-162 dispersed
Sed01g1872 Sed-Chr1:13889692 Sed08g2623 Sed-Chr8:38485567 1.60E-120 dispersed
Sed01g1873 Sed-Chr1:13889692 Sed08g2623 Sed-Chr8:38485567 1.60E-120 dispersed
Sed08g2623 Sed-Chr8:38485567 Sed08g2626 Sed-Chr8:38485567 8.60E-186 dispersed
Sed08g2623 Sed-Chr8:38485567 Sed08g2624 Sed-Chr8:38485567 8.60E-186 tandem
Sed01g1869 Sed-Chr1:13889692 Sed08g2623 Sed-Chr8:38485567 3.90E-162 wgd
Sed14g1619 Sed-Chr14:24380671 Sed08g2623 Sed-Chr8:38485567 1.10E-127 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2623 K12486 - csv:101211569 549.28