Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2624 ATGAGTAATTTTTCAGTGGATTCGAGGGGACCTGAATCAGGTGTGGTTATTGAACTGTGTATGAGTGCGATTAGAAATCGGATTTGTAAGCTTTTATGGTTTGAACTTCGTTGTGCAGCTAAATGTAGATTAAAGGATTTATTGCTTCACAAAGATAATCAACTTTGTGCAGATTGTGATGCTCCAGATCCTAAATGGGCCTCTGCAAATATTGGTGTGTTTATATGCTTAAAATGTAGTGGCGTGCATAGAAGCCTTGGAACACACGTATCGAAGGTCTTATCAATAACTTTGGATGAATGGTCTGATTATGAGATTGATGCGATGATAGAGGTTGGAGGAAATGGTTCTGCTAATGCAATATACGAGGCTTTTATCCCCGATGGATATACAAAGCCTGGACCAAGTGCCAGCCCCGAGGAGCGTTCAAAGTTCATTCGGTCTAAGTACGAACTTCAAGAATTTTTAAAACCTGGCTTGCGAATTGGATCCAGTGACTCCTCAAAGAGTCCTAAGGAGCCAAGTTTCTTTCAAGAGATTGCTGATAGCTTTCGAAGCTCAAACTCTTCAAAGAAATCACCACAAGAAGGCATGGTTGAATTTATGGGATTATTGAAAGTGAAGGTGATTAAAGGCACAAACTTAGCCGTGAGAGATGTGAAGTCCAGTGATACGTTCATTACCGTGACTCTTGGGCAACAGACTGCTAAAACAACGGTGGTAAATAGCGACTTGAATCCAGTTTGGAACGAGGAGCTCATGCTGTCGGTTCCTCAAGAATATGGACCCTTGAAGTTGCAAGTGTTCGACCAGGACGTTTTTTCAGCTAATGACTTAATGGGCGAAGCAGAAATTGACCTCCAGCCGATGATAACATCAGCAATGGCATGTGGAGATGCTACAACATTTGTGAATATGCAGATAGGAAAATGGTTGAAGTCAGACGACAACGCTCTCATCGACGATAGTGCTGTCAATATCGTCAACGGGACAGTGAAACAAGAGGTGTCGATCAAGCTCCAAAATGTGGAATCAGGTGAAGTTTACTTGGAACTAGAGTGGATTCCTCTTGATCAATAG 1080 42.04 MSNFSVDSRGPESGVVIELCMSAIRNRICKLLWFELRCAAKCRLKDLLLHKDNQLCADCDAPDPKWASANIGVFICLKCSGVHRSLGTHVSKVLSITLDEWSDYEIDAMIEVGGNGSANAIYEAFIPDGYTKPGPSASPEERSKFIRSKYELQEFLKPGLRIGSSDSSKSPKEPSFFQEIADSFRSSNSSKKSPQEGMVEFMGLLKVKVIKGTNLAVRDVKSSDTFITVTLGQQTAKTTVVNSDLNPVWNEELMLSVPQEYGPLKLQVFDQDVFSANDLMGEAEIDLQPMITSAMACGDATTFVNMQIGKWLKSDDNALIDDSAVNIVNGTVKQEVSIKLQNVESGEVYLELEWIPLDQ 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 38485567 38489879 - Sed0012887.2 Sed08g2624 724400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2624 359 FunFam stromal membrane-associated protein 1 isoform X1 34 160 - -
Sed08g2624 359 PRINTS HIV Rev interacting protein signature 53 72 IPR001164 GO:0005096(InterPro)
Sed08g2624 359 PRINTS HIV Rev interacting protein signature 72 89 IPR001164 GO:0005096(InterPro)
Sed08g2624 359 PRINTS HIV Rev interacting protein signature 93 114 IPR001164 GO:0005096(InterPro)
Sed08g2624 359 Pfam Putative GTPase activating protein for Arf 44 157 IPR001164 GO:0005096(InterPro)
Sed08g2624 359 ProSiteProfiles C2 domain profile. 186 300 IPR000008 -
Sed08g2624 359 Pfam C2 domain 203 290 IPR000008 -
Sed08g2624 359 Gene3D Arf GTPase activating protein 36 160 IPR038508 -
Sed08g2624 359 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 40 359 IPR044518 GO:0005096(InterPro)|GO:0005543(InterPro)
Sed08g2624 359 SMART arf_gap_3 41 163 IPR001164 GO:0005096(InterPro)
Sed08g2624 359 Gene3D C2 domain 201 359 IPR035892 -
Sed08g2624 359 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 357 IPR035892 -
Sed08g2624 359 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 201 359 - -
Sed08g2624 359 SMART C2_3c 204 299 IPR000008 -
Sed08g2624 359 ProSiteProfiles ARF GTPase-activating proteins domain profile. 41 166 IPR001164 GO:0005096(InterPro)
Sed08g2624 359 SUPERFAMILY ArfGap/RecO-like zinc finger 44 157 IPR037278 -
Sed08g2624 359 CDD ArfGap 44 150 - -
Sed08g2624 359 CDD C2_ArfGAP 203 346 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2624 Sed-Chr8:38485567 Sed08g2626 Sed-Chr8:38485567 1.40E-205 dispersed
Sed08g2623 Sed-Chr8:38485567 Sed08g2624 Sed-Chr8:38485567 8.60E-186 tandem
Sed08g2624 Sed-Chr8:38485567 Sed08g2625 Sed-Chr8:38485567 1.90E-130 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2624 K12486 - csv:101211569 536.184