Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed08g2624 | ATGAGTAATTTTTCAGTGGATTCGAGGGGACCTGAATCAGGTGTGGTTATTGAACTGTGTATGAGTGCGATTAGAAATCGGATTTGTAAGCTTTTATGGTTTGAACTTCGTTGTGCAGCTAAATGTAGATTAAAGGATTTATTGCTTCACAAAGATAATCAACTTTGTGCAGATTGTGATGCTCCAGATCCTAAATGGGCCTCTGCAAATATTGGTGTGTTTATATGCTTAAAATGTAGTGGCGTGCATAGAAGCCTTGGAACACACGTATCGAAGGTCTTATCAATAACTTTGGATGAATGGTCTGATTATGAGATTGATGCGATGATAGAGGTTGGAGGAAATGGTTCTGCTAATGCAATATACGAGGCTTTTATCCCCGATGGATATACAAAGCCTGGACCAAGTGCCAGCCCCGAGGAGCGTTCAAAGTTCATTCGGTCTAAGTACGAACTTCAAGAATTTTTAAAACCTGGCTTGCGAATTGGATCCAGTGACTCCTCAAAGAGTCCTAAGGAGCCAAGTTTCTTTCAAGAGATTGCTGATAGCTTTCGAAGCTCAAACTCTTCAAAGAAATCACCACAAGAAGGCATGGTTGAATTTATGGGATTATTGAAAGTGAAGGTGATTAAAGGCACAAACTTAGCCGTGAGAGATGTGAAGTCCAGTGATACGTTCATTACCGTGACTCTTGGGCAACAGACTGCTAAAACAACGGTGGTAAATAGCGACTTGAATCCAGTTTGGAACGAGGAGCTCATGCTGTCGGTTCCTCAAGAATATGGACCCTTGAAGTTGCAAGTGTTCGACCAGGACGTTTTTTCAGCTAATGACTTAATGGGCGAAGCAGAAATTGACCTCCAGCCGATGATAACATCAGCAATGGCATGTGGAGATGCTACAACATTTGTGAATATGCAGATAGGAAAATGGTTGAAGTCAGACGACAACGCTCTCATCGACGATAGTGCTGTCAATATCGTCAACGGGACAGTGAAACAAGAGGTGTCGATCAAGCTCCAAAATGTGGAATCAGGTGAAGTTTACTTGGAACTAGAGTGGATTCCTCTTGATCAATAG | 1080 | 42.04 | MSNFSVDSRGPESGVVIELCMSAIRNRICKLLWFELRCAAKCRLKDLLLHKDNQLCADCDAPDPKWASANIGVFICLKCSGVHRSLGTHVSKVLSITLDEWSDYEIDAMIEVGGNGSANAIYEAFIPDGYTKPGPSASPEERSKFIRSKYELQEFLKPGLRIGSSDSSKSPKEPSFFQEIADSFRSSNSSKKSPQEGMVEFMGLLKVKVIKGTNLAVRDVKSSDTFITVTLGQQTAKTTVVNSDLNPVWNEELMLSVPQEYGPLKLQVFDQDVFSANDLMGEAEIDLQPMITSAMACGDATTFVNMQIGKWLKSDDNALIDDSAVNIVNGTVKQEVSIKLQNVESGEVYLELEWIPLDQ | 359 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 38485567 | 38489879 | - | Sed0012887.2 | Sed08g2624 | 724400 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed08g2624 | 359 | FunFam | stromal membrane-associated protein 1 isoform X1 | 34 | 160 | - | - | |
Sed08g2624 | 359 | PRINTS | HIV Rev interacting protein signature | 53 | 72 | IPR001164 | GO:0005096(InterPro) | |
Sed08g2624 | 359 | PRINTS | HIV Rev interacting protein signature | 72 | 89 | IPR001164 | GO:0005096(InterPro) | |
Sed08g2624 | 359 | PRINTS | HIV Rev interacting protein signature | 93 | 114 | IPR001164 | GO:0005096(InterPro) | |
Sed08g2624 | 359 | Pfam | Putative GTPase activating protein for Arf | 44 | 157 | IPR001164 | GO:0005096(InterPro) | |
Sed08g2624 | 359 | ProSiteProfiles | C2 domain profile. | 186 | 300 | IPR000008 | - | |
Sed08g2624 | 359 | Pfam | C2 domain | 203 | 290 | IPR000008 | - | |
Sed08g2624 | 359 | Gene3D | Arf GTPase activating protein | 36 | 160 | IPR038508 | - | |
Sed08g2624 | 359 | PANTHER | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 | 40 | 359 | IPR044518 | GO:0005096(InterPro)|GO:0005543(InterPro) | |
Sed08g2624 | 359 | SMART | arf_gap_3 | 41 | 163 | IPR001164 | GO:0005096(InterPro) | |
Sed08g2624 | 359 | Gene3D | C2 domain | 201 | 359 | IPR035892 | - | |
Sed08g2624 | 359 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 201 | 357 | IPR035892 | - | |
Sed08g2624 | 359 | FunFam | ADP-ribosylation factor GTPase-activating protein AGD12 | 201 | 359 | - | - | |
Sed08g2624 | 359 | SMART | C2_3c | 204 | 299 | IPR000008 | - | |
Sed08g2624 | 359 | ProSiteProfiles | ARF GTPase-activating proteins domain profile. | 41 | 166 | IPR001164 | GO:0005096(InterPro) | |
Sed08g2624 | 359 | SUPERFAMILY | ArfGap/RecO-like zinc finger | 44 | 157 | IPR037278 | - | |
Sed08g2624 | 359 | CDD | ArfGap | 44 | 150 | - | - | |
Sed08g2624 | 359 | CDD | C2_ArfGAP | 203 | 346 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed08g2624 | Sed-Chr8:38485567 | Sed08g2626 | Sed-Chr8:38485567 | 1.40E-205 | dispersed | |
Sed08g2623 | Sed-Chr8:38485567 | Sed08g2624 | Sed-Chr8:38485567 | 8.60E-186 | tandem | |
Sed08g2624 | Sed-Chr8:38485567 | Sed08g2625 | Sed-Chr8:38485567 | 1.90E-130 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed08g2624 | K12486 | - | csv:101211569 | 536.184 |