Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed08g2625 | ATGAGTAATTTTTCAGTGGATTCGAGGGGACCTGAATCAGCTAAATGTAGATTAAAGGATTTATTGCTTCACAAAGATAATCAACTTTGTGCAGATTGTGATGCTCCAGATCCTAAATGGGCCTCTGCAAATATTGGTGTGTTTATATGCTTAAAATGTAGTGGCGTGCATAGAAGCCTTGGAACACACGTATCGAAGGTCTTATCAATAACTTTGGATGAATGGTCTGATTATGAGATTGATGCGATGATAGAGGTTGGAGGAAATGGTTCTGCTAATGCAATATACGAGGCTTTTATCCCCGATGGATATACAAAGCCTGGACCAAGTGCCAGCCCCGAGGAGCGTTCAAAGTTCATTCGGTCTAAGTACGAACTTCAAGAATTTTTAAAACCTGGCTTGCGAATTGGATCCAGTGACTCCTCAAAGAGTCCTAAGGAGCCAAGTTTCTTTCAAGAGATTGCTGATAGCTTTCGAAGCTCAAACTCTTCAAAGAAATCACCACAAGAAGGCATGGTTGAATTTATGGGATTATTGAAAGTGAAGGTGATTAAAGGCACAAACTTAGCCGTGAGAGATGTGAAGTCCAGTGATACGTTCATTACCGTGACTCTTGGGCAACAGACTGCTAAAACAACGGTGGTAAATAGCGACTTGAATCCAGTTTGGAACGAGGAGCTCATGCTGTCGGTTCCTCAAGAATATGGACCCTTGAAGTTGGTAAGTGTTTGGAGATTTTTTACTGGTAGTTTCGCAATCAAATAG | 765 | 41.31 | MSNFSVDSRGPESAKCRLKDLLLHKDNQLCADCDAPDPKWASANIGVFICLKCSGVHRSLGTHVSKVLSITLDEWSDYEIDAMIEVGGNGSANAIYEAFIPDGYTKPGPSASPEERSKFIRSKYELQEFLKPGLRIGSSDSSKSPKEPSFFQEIADSFRSSNSSKKSPQEGMVEFMGLLKVKVIKGTNLAVRDVKSSDTFITVTLGQQTAKTTVVNSDLNPVWNEELMLSVPQEYGPLKLVSVWRFFTGSFAIK | 254 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 38485567 | 38489879 | - | Sed0012887.3 | Sed08g2625 | 724401 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed08g2625 | 254 | Gene3D | Arf GTPase activating protein | 3 | 134 | IPR038508 | - | |
Sed08g2625 | 254 | SUPERFAMILY | ArfGap/RecO-like zinc finger | 18 | 131 | IPR037278 | - | |
Sed08g2625 | 254 | PRINTS | HIV Rev interacting protein signature | 46 | 63 | IPR001164 | GO:0005096(InterPro) | |
Sed08g2625 | 254 | PRINTS | HIV Rev interacting protein signature | 67 | 88 | IPR001164 | GO:0005096(InterPro) | |
Sed08g2625 | 254 | PRINTS | HIV Rev interacting protein signature | 27 | 46 | IPR001164 | GO:0005096(InterPro) | |
Sed08g2625 | 254 | Pfam | C2 domain | 177 | 239 | IPR000008 | - | |
Sed08g2625 | 254 | CDD | ArfGap | 18 | 124 | - | - | |
Sed08g2625 | 254 | Gene3D | C2 domain | 157 | 250 | IPR035892 | - | |
Sed08g2625 | 254 | Pfam | Putative GTPase activating protein for Arf | 18 | 131 | IPR001164 | GO:0005096(InterPro) | |
Sed08g2625 | 254 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 174 | 244 | IPR035892 | - | |
Sed08g2625 | 254 | ProSiteProfiles | ARF GTPase-activating proteins domain profile. | 15 | 140 | IPR001164 | GO:0005096(InterPro) | |
Sed08g2625 | 254 | SMART | arf_gap_3 | 15 | 137 | IPR001164 | GO:0005096(InterPro) | |
Sed08g2625 | 254 | FunFam | Arf-GAP with dual PH domain-containing protein 1 | 10 | 138 | - | - | |
Sed08g2625 | 254 | PANTHER | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 | 9 | 240 | IPR044518 | GO:0005096(InterPro)|GO:0005543(InterPro) | |
Sed08g2625 | 254 | ProSiteProfiles | C2 domain profile. | 160 | 254 | IPR000008 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed08g2625 | Sed-Chr8:38485567 | Sed08g2627 | Sed-Chr8:38485567 | 2.70E-139 | dispersed | |
Sed08g2624 | Sed-Chr8:38485567 | Sed08g2625 | Sed-Chr8:38485567 | 1.90E-130 | tandem | |
Sed08g2625 | Sed-Chr8:38485567 | Sed08g2626 | Sed-Chr8:38485567 | 7.90E-131 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed08g2625 | K12486 | - | csv:101211569 | 403.29 |