Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2625 ATGAGTAATTTTTCAGTGGATTCGAGGGGACCTGAATCAGCTAAATGTAGATTAAAGGATTTATTGCTTCACAAAGATAATCAACTTTGTGCAGATTGTGATGCTCCAGATCCTAAATGGGCCTCTGCAAATATTGGTGTGTTTATATGCTTAAAATGTAGTGGCGTGCATAGAAGCCTTGGAACACACGTATCGAAGGTCTTATCAATAACTTTGGATGAATGGTCTGATTATGAGATTGATGCGATGATAGAGGTTGGAGGAAATGGTTCTGCTAATGCAATATACGAGGCTTTTATCCCCGATGGATATACAAAGCCTGGACCAAGTGCCAGCCCCGAGGAGCGTTCAAAGTTCATTCGGTCTAAGTACGAACTTCAAGAATTTTTAAAACCTGGCTTGCGAATTGGATCCAGTGACTCCTCAAAGAGTCCTAAGGAGCCAAGTTTCTTTCAAGAGATTGCTGATAGCTTTCGAAGCTCAAACTCTTCAAAGAAATCACCACAAGAAGGCATGGTTGAATTTATGGGATTATTGAAAGTGAAGGTGATTAAAGGCACAAACTTAGCCGTGAGAGATGTGAAGTCCAGTGATACGTTCATTACCGTGACTCTTGGGCAACAGACTGCTAAAACAACGGTGGTAAATAGCGACTTGAATCCAGTTTGGAACGAGGAGCTCATGCTGTCGGTTCCTCAAGAATATGGACCCTTGAAGTTGGTAAGTGTTTGGAGATTTTTTACTGGTAGTTTCGCAATCAAATAG 765 41.31 MSNFSVDSRGPESAKCRLKDLLLHKDNQLCADCDAPDPKWASANIGVFICLKCSGVHRSLGTHVSKVLSITLDEWSDYEIDAMIEVGGNGSANAIYEAFIPDGYTKPGPSASPEERSKFIRSKYELQEFLKPGLRIGSSDSSKSPKEPSFFQEIADSFRSSNSSKKSPQEGMVEFMGLLKVKVIKGTNLAVRDVKSSDTFITVTLGQQTAKTTVVNSDLNPVWNEELMLSVPQEYGPLKLVSVWRFFTGSFAIK 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 38485567 38489879 - Sed0012887.3 Sed08g2625 724401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2625 254 Gene3D Arf GTPase activating protein 3 134 IPR038508 -
Sed08g2625 254 SUPERFAMILY ArfGap/RecO-like zinc finger 18 131 IPR037278 -
Sed08g2625 254 PRINTS HIV Rev interacting protein signature 46 63 IPR001164 GO:0005096(InterPro)
Sed08g2625 254 PRINTS HIV Rev interacting protein signature 67 88 IPR001164 GO:0005096(InterPro)
Sed08g2625 254 PRINTS HIV Rev interacting protein signature 27 46 IPR001164 GO:0005096(InterPro)
Sed08g2625 254 Pfam C2 domain 177 239 IPR000008 -
Sed08g2625 254 CDD ArfGap 18 124 - -
Sed08g2625 254 Gene3D C2 domain 157 250 IPR035892 -
Sed08g2625 254 Pfam Putative GTPase activating protein for Arf 18 131 IPR001164 GO:0005096(InterPro)
Sed08g2625 254 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 174 244 IPR035892 -
Sed08g2625 254 ProSiteProfiles ARF GTPase-activating proteins domain profile. 15 140 IPR001164 GO:0005096(InterPro)
Sed08g2625 254 SMART arf_gap_3 15 137 IPR001164 GO:0005096(InterPro)
Sed08g2625 254 FunFam Arf-GAP with dual PH domain-containing protein 1 10 138 - -
Sed08g2625 254 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 9 240 IPR044518 GO:0005096(InterPro)|GO:0005543(InterPro)
Sed08g2625 254 ProSiteProfiles C2 domain profile. 160 254 IPR000008 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2625 Sed-Chr8:38485567 Sed08g2627 Sed-Chr8:38485567 2.70E-139 dispersed
Sed08g2624 Sed-Chr8:38485567 Sed08g2625 Sed-Chr8:38485567 1.90E-130 tandem
Sed08g2625 Sed-Chr8:38485567 Sed08g2626 Sed-Chr8:38485567 7.90E-131 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2625 K12486 - csv:101211569 403.29