Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2628 ATGGCTCTTGCTGTTCATAGAGATTCGTCGAGTAGGCAGATGGATACAAGCAAGTATGTGAGATATACGCCTGAGCAAGTGGATGCTTTAGAAAGGGTTTATGTTGAATGTCCAAAGCCCAGTTCGTTGAAGAGGCAACAGCTCATTCGGGAGTGCCCTATTCTTTCTAATATTGAGCCTAAGCAGATCAAAGTTTGGTTCCAAAATCGCAGATGTCGTGAAAAGCAAAGGAAGGAGGCTTCTCGTCTCCAAACAGTTAATAGGAAGTTGACTGCGATGAACAAGCTGTTGATGGAAGAGAATGACCGTCTGCAGAAGCAGGTCTCTCGTTTGGTTTATGACAACGGATACATGAAACAACAGCTGCATACTGCATCTGGAACAGCCACGGACAACAGCTGTGAGTCCGTGGTCGTAAGTGGTCAACACCATCAACAGCAAAACCCAACTAAGCATACCCAAAAGGATGCTAATAACCCAGCTGGTCTTCTTGCGATAGCCGAGGAGACATTGGCAGAGTTCCTTTCCAAGGCAACAGGAACTGCTGTCGACTGGGTTCAAATGATTGGGATGAAGCCTGGTCCGGATTCAATTGGGATTGTTGCTGTTTCCCGCAACTGCAATGGGGTAGCAGCACGAGCCTGTGGTCTAGTGAGTCTTGAGCCAACAAAGGTGGCTGAAATTCTCAAAGATCGTCTGTCATGGTTTCGTGACTGCCGTTGTGTCGAAGTATTAAGTGCGATTTCTACAGGAAATGGGGGGGCTATAGAACTCTTATATATGCAGACATATGCACCTACAACTCTAGCTGCAGCACGTGACTTTTGGACTCTTCGATACACTACAAGCTTGGAAGATGGCAGCATAGTGATATGTGAGAGATCATTGACAACGTCTACTGGTGGCCCATCGGGGCCTCCTCCATCTACTTTTGTAAGAGCTGAAATGCTTCCAAGTGGGTATCTTATTCGAGCTTGTGAGGGTGGATCTCTTATTCACATTGTTGATCATGTTGATTTAGATGCTTGGAGTGTTCCGGAAGTTCTTAGGCCACTTTATGAATCAACAAAAATTCTAGCTCAGAGAATGACTGTAGCTGCCTTACGCTATGTTCGGCAAATTTCTCAAGAGGCCAGTGGAGAAATCCAATTGAGTGGGGGCCGCCAACCGGCCGTTTTAAGAACTTTCAGTCAAAGGCTCTGCAGGGGTTTCAATGATGCAGTAAATGGATTTGTGGATGATGGTTGGTCGCTTCTAGATAGCGACGGAATGGAGGATGTGACAGTTGTTATTAATTCATCTCCAAACAAATTCCTCGGTTCGCAATACAACACATCAGTGTCTCCTACTTTTGGAGGTGTGCTGTGTGCCAAGGCGTCAATGCTGCTGCAGAATGTTCCCCCTGTTCTGCTTGTTCGTTTCCTTCGGGAGCATCGTTCAGAATGGGCTGATTATGGAGTTGATGCGTACTCTGCCGCATGTCTTAAAGCCGGTGCATATGCTGTTCCATGTGCGAGACCCGGTGGCTTCCCGAGCGGTCAGGTCATTTTACCACTTGCACATACCGTAGAGAATGAGGAGTTCTTGGAGGTCGTTCGGTTAGAGGGCCAGGCTATCTTCCCTGAAGAAGCCATTTTAGGTGGACGGGATATGTACTTATTGCAGATGTGTAGTGGGGTTGATGAAAATGCAGTTGGTAACTGTGCTCAGCTCGTATTTGCTCCTATAGACGAATCATTTGCCGATGATGCTCCCTTGCTGCCATCTGGTTTTCGTGTCATACCATTGGAGTCCAAAACGGATGCGCCTGCTGCAACTCGAACTTTGGATTTGGCATCTACTCTAGAAGTTCGACCTGGCACTACTCGTCCAGGCAGTGAAACTGATGCTACAAACTATAACCTTAGGTCAGTCTTGACTATTGCATTCCAATTCACTTTTGAGAATCACATGCGGGACAGTGTGGCTACTATGGCGAGACAATATGTGCGAACCGTTGTTGGATCAGTCCAAAGGGTTGCCATGGCTATTGCCCCCTCGCAGCTTGGCTCTCAAATCGGTCTGAAAAGCCTTCCTGGCTCCCCAGAGGCTTTCACATTGGCTCAGTGGGTCTCACGAAGCTACAGGATCCACACAGGGGCAGAGCTCTTTCAGGTTGAATCCCAGTTTGCTGATGCTATCTTGAAGCAGCTTTGGCACCATTCAGATGCAATCTTGTGCTGCACTGTCAAAACTAATGCATCTCCTGTGTTCACATTTGCGAACCAAGCCGGGCTCGACATGCTCGAAACTACCCTCGTAGCTCTTCAAGATATAATGCTTGACAAGATCCTTGAGGATGCTGGTCGGAAGATACTATGCTCTGAGTTCTCCAAGATAATGCAACAGGGATTTGTATACCTTCCAGCAGGGATATGCATCTCGAGTATGGGCAGGCCGGTGTCGTATGAACAGGCAATTGCGTGGAAAGTTCAGAATGATGATGATTTCCATCACTGTCTGGCTTTCATGTTTGTTAACTGGTCCTTTATGTGA 2535 47.18 MALAVHRDSSSRQMDTSKYVRYTPEQVDALERVYVECPKPSSLKRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSRLVYDNGYMKQQLHTASGTATDNSCESVVVSGQHHQQQNPTKHTQKDANNPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCNGVAARACGLVSLEPTKVAEILKDRLSWFRDCRCVEVLSAISTGNGGAIELLYMQTYAPTTLAAARDFWTLRYTTSLEDGSIVICERSLTTSTGGPSGPPPSTFVRAEMLPSGYLIRACEGGSLIHIVDHVDLDAWSVPEVLRPLYESTKILAQRMTVAALRYVRQISQEASGEIQLSGGRQPAVLRTFSQRLCRGFNDAVNGFVDDGWSLLDSDGMEDVTVVINSSPNKFLGSQYNTSVSPTFGGVLCAKASMLLQNVPPVLLVRFLREHRSEWADYGVDAYSAACLKAGAYAVPCARPGGFPSGQVILPLAHTVENEEFLEVVRLEGQAIFPEEAILGGRDMYLLQMCSGVDENAVGNCAQLVFAPIDESFADDAPLLPSGFRVIPLESKTDAPAATRTLDLASTLEVRPGTTRPGSETDATNYNLRSVLTIAFQFTFENHMRDSVATMARQYVRTVVGSVQRVAMAIAPSQLGSQIGLKSLPGSPEAFTLAQWVSRSYRIHTGAELFQVESQFADAILKQLWHHSDAILCCTVKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILEDAGRKILCSEFSKIMQQGFVYLPAGICISSMGRPVSYEQAIAWKVQNDDDFHHCLAFMFVNWSFM 844
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 38501185 38508320 + Sed0025540.1 Sed08g2628 724404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2628 844 SUPERFAMILY Homeodomain-like 18 80 IPR009057 -
Sed08g2628 844 SUPERFAMILY Bet v1-like 166 374 - -
Sed08g2628 844 Coils Coil 87 107 - -
Sed08g2628 844 Pfam MEKHLA domain 699 843 IPR013978 -
Sed08g2628 844 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 13 844 IPR044830 GO:0003700(InterPro)
Sed08g2628 844 SMART HOX_1 15 81 IPR001356 GO:0003677(InterPro)
Sed08g2628 844 Gene3D - 9 84 - -
Sed08g2628 844 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677(InterPro)
Sed08g2628 844 FunFam Homeobox-leucine zipper protein REVOLUTA 18 73 - -
Sed08g2628 844 CDD START_ArGLABRA2_like 160 374 - -
Sed08g2628 844 Pfam Homeodomain 18 76 IPR001356 GO:0003677(InterPro)
Sed08g2628 844 Gene3D - 185 375 IPR023393 -
Sed08g2628 844 CDD bZIP 70 109 - -
Sed08g2628 844 SMART START_1 165 374 IPR002913 GO:0008289(InterPro)
Sed08g2628 844 CDD homeodomain 18 78 IPR001356 GO:0003677(InterPro)
Sed08g2628 844 Pfam START domain 166 373 IPR002913 GO:0008289(InterPro)
Sed08g2628 844 ProSiteProfiles START domain profile. 156 383 IPR002913 GO:0008289(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2628 Sed-Chr8:38501185 Sed10g0068 Sed-Chr10:421112 0.00E+00 dispersed
Sed01g1868 Sed-Chr1:13866318 Sed08g2628 Sed-Chr8:38501185 0.00E+00 wgd
Sed14g1615 Sed-Chr14:24352331 Sed08g2628 Sed-Chr8:38501185 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39457 PF01852 START 4.60E-50 CL0209 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2628 K09338 - csv:101211318 1550.41