Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2632 ATGAAGAAGAATTTGAATAAGAAAAGCTCGGCCCCTTCTAAAGGGTCGCAGAAGGGGAGGGATTTTTCCCTCAGTAAGGATCCTTTTTTCAGTTCCGAATCGAGGAAACGGAGGAAGATTGTCGATGATGAGATTGAGAGTGGCGAGTCGGACGAGGATAATGGGCTCGTGGGCGTTGGTGCTGAGGATGAGGAGTTTGAGGAAGAAACTGCAGACGAGAAAAGGAAGAGAGTAGCAGATGAGTACTTGGAGAGAGTTCGGGGAATTGCGAGGAGAAAAAAGGAGAGGGAAGATGAAGATGATAGCGGCGACGAAGAAGGAAAAGATTCACTTGTTGCACAAATTCTTCAGCAAGAGCAACTCGAAGATAGTGGAAGGATTCGGAGAGAACTTGCATCAAGGGTTCAGAAGCCAGGAGCTAATGATGAATTTCAAGTCTTGGTTAAGCACAGACAATCTGTTACAACTGTTGCTCTATCTGATGATGATTTGAAGGGGTTTTCAGCGTCCAAGGATGGCACAATCTTACACTGGGATGTAGATAGTGGTAAAGGAGAAAAATACCAATGGCCGAGTGAGGAAGTGTTGAGATCGCATGGTGTTAAGAATCCCCAAGGCCGGGCTGTAAAGCATAGTAAAGTCATTTTTTCATTAGCCATCAGTTCTGATGGTCGATATTTGGCAGGTGGAGGCTTAGACCGCCATGTTCATGTATGGGATACTCGTACACGAGAGCATATTCAGGCATTTCCTGGTCATAGAGGACCTGTTTCGTGTTTGACTTTCAGGCAAGGGACCTCAGAACTTTTTTCTGGTTCATATGATCGAACTGTCAAGATATGGAATGTAGAAGACAGAGCTTATATAAATACATTATTTGGTCACCAAAGTGAAATACTGACCATCGATTGCTTACGGAAAGAAAGATTGCTTACTGTTGGACGTGATCGGAGTATGCAATTATGGAAGGTCCCAGAGGAGTCCCGTTTAGTGTTTCGTGCACCTAAATCATCCTTGGAATGTTGCCGTTTTATAAGCAATGATGAGTTCTTATCTGGATCAGATGACGGGAGTATTGAGCTTTGGACTATGTTAAAAAAGAAGCCTGTTTATATTGTACGAAATGCTCATCCTTCATTGTCTTCCACGAATTTGGAGCCAAAGGAAAATGGTGCCATCCCCAATGGTTGTATGGGAAATGGGGAGGTGAATACTTCTCATAGTTTGTCAGCATGCTCTTGGGTAGGTTCAGTGGCAGTATGTAGAAACAGTGACCTTGCTGCATCAGGTGCTGGCAACGGTTCTGTTCGTTTATGGGCTCTCACAACTGAAAAGAAAGATGTTCAGCCATTATATGACCTTCCTTTGGTTGGGTTTGTGAACTCCTTGACTTTTGCCAATTCTGGAAGGTTTGTGGTAGCTGGAGTTGGGCAGGAACCTCGTCTGGGAAGGTGGGGGCGAATCTCAGCTGCTCGAAATGGAGTTGCAGTTCATCCCCTTAAGCTCTCATAA 1512 44.58 MKKNLNKKSSAPSKGSQKGRDFSLSKDPFFSSESRKRRKIVDDEIESGESDEDNGLVGVGAEDEEFEEETADEKRKRVADEYLERVRGIARRKKEREDEDDSGDEEGKDSLVAQILQQEQLEDSGRIRRELASRVQKPGANDEFQVLVKHRQSVTTVALSDDDLKGFSASKDGTILHWDVDSGKGEKYQWPSEEVLRSHGVKNPQGRAVKHSKVIFSLAISSDGRYLAGGGLDRHVHVWDTRTREHIQAFPGHRGPVSCLTFRQGTSELFSGSYDRTVKIWNVEDRAYINTLFGHQSEILTIDCLRKERLLTVGRDRSMQLWKVPEESRLVFRAPKSSLECCRFISNDEFLSGSDDGSIELWTMLKKKPVYIVRNAHPSLSSTNLEPKENGAIPNGCMGNGEVNTSHSLSACSWVGSVAVCRNSDLAASGAGNGSVRLWALTTEKKDVQPLYDLPLVGFVNSLTFANSGRFVVAGVGQEPRLGRWGRISAARNGVAVHPLKLS 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 38512257 38517037 - Sed0017304.3 Sed08g2632 724408

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2632 503 MobiDBLite consensus disorder prediction 46 69 - -
Sed08g2632 503 ProSiteProfiles Trp-Asp (WD) repeats profile. 208 249 IPR001680 GO:0005515(InterPro)
Sed08g2632 503 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 250 284 - -
Sed08g2632 503 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 208 243 - -
Sed08g2632 503 ProSiteProfiles Trp-Asp (WD) repeats profile. 250 291 IPR001680 GO:0005515(InterPro)
Sed08g2632 503 SMART WD40_4 140 179 IPR001680 GO:0005515(InterPro)
Sed08g2632 503 SMART WD40_4 402 440 IPR001680 GO:0005515(InterPro)
Sed08g2632 503 SMART WD40_4 202 240 IPR001680 GO:0005515(InterPro)
Sed08g2632 503 SMART WD40_4 325 363 IPR001680 GO:0005515(InterPro)
Sed08g2632 503 SMART WD40_4 285 323 IPR001680 GO:0005515(InterPro)
Sed08g2632 503 SMART WD40_4 243 282 IPR001680 GO:0005515(InterPro)
Sed08g2632 503 PRINTS G protein beta WD-40 repeat signature 269 283 IPR020472 -
Sed08g2632 503 PRINTS G protein beta WD-40 repeat signature 350 364 IPR020472 -
Sed08g2632 503 PRINTS G protein beta WD-40 repeat signature 227 241 IPR020472 -
Sed08g2632 503 MobiDBLite consensus disorder prediction 1 110 - -
Sed08g2632 503 Pfam WD domain, G-beta repeat 211 240 IPR001680 GO:0005515(InterPro)
Sed08g2632 503 Pfam WD domain, G-beta repeat 330 362 IPR001680 GO:0005515(InterPro)
Sed08g2632 503 Pfam WD domain, G-beta repeat 145 179 IPR001680 GO:0005515(InterPro)
Sed08g2632 503 Pfam WD domain, G-beta repeat 246 282 IPR001680 GO:0005515(InterPro)
Sed08g2632 503 Pfam WD domain, G-beta repeat 407 439 IPR001680 GO:0005515(InterPro)
Sed08g2632 503 SUPERFAMILY WD40 repeat-like 144 478 IPR036322 GO:0005515(InterPro)
Sed08g2632 503 MobiDBLite consensus disorder prediction 70 99 - -
Sed08g2632 503 CDD WD40 211 475 - -
Sed08g2632 503 ProSitePatterns Trp-Asp (WD) repeats signature. 269 283 IPR019775 -
Sed08g2632 503 PANTHER U3 SMALL NUCLEOLAR RNA INTERACTING PROTEIN 2 9 502 IPR039241 GO:0030515(PANTHER)|GO:0032040(PANTHER)|GO:0034511(InterPro)
Sed08g2632 503 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 147 184 - -
Sed08g2632 503 MobiDBLite consensus disorder prediction 30 45 - -
Sed08g2632 503 FunFam U3 snoRNP-associated protein-like EMB2271 140 503 - -
Sed08g2632 503 ProSiteProfiles Trp-Asp (WD) repeats profile. 147 188 IPR001680 GO:0005515(InterPro)
Sed08g2632 503 ProSitePatterns Trp-Asp (WD) repeats signature. 227 241 IPR019775 -
Sed08g2632 503 Gene3D - 139 503 IPR015943 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2632 K14793 - - csv:101223179 827.78
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2630 Sed-Chr8:38512257 Sed08g2632 Sed-Chr8:38512257 2.50E-269 dispersed
Sed08g2631 Sed-Chr8:38512257 Sed08g2632 Sed-Chr8:38512257 2.50E-269 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g236 Blo04g00842 Blo16g00123 . Bda15g00506 Bpe12g00703 Bpe13g00370 Bma06g00058 . . . Cma10g00321 Cma11g00302 Car10g00301 Car11g00276 Sed08g2632 . Cpe04g01381 Bhi02g00121 Tan09g1843 Cmetu09g0775 . Hepe09g0374 . . Cla06g01433 Cam06g1587 Cec06g1647 Cco06g1639 Clacu06g1548 Cmu06g1503 Cre06g2312 Cone2ag0750 . . . . . . . Blo13g00177 . . . . Bpe15g00520 Bma03g00908 Bma08g00007 . Cmo10g00344 Cmo11g00305 . . . . . . . . . . . . . . . . . . . . Lsi06g01300 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004713 2 1 1 1 1 1 2 1 1 1 1 1 2 1 2 2 1 2 2 1 1 1 1 1 1 1 1 6 1 1 42