Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2636 ATGGGTGTATTTATCCCATGCTTACAGAACATATTGGGAATCATTTACTATATTCGATTTTCTTGGATTGTTGGCATGGCTGGGATTGGCGAATCATTAGTGCTGGTGGCATTTTGTGGTTTATGTACGTTCTTGACTTCAATTTCACTGAGTGCTATTGCAACTAATGGTGCAATGAAGGGTGGGGGACCATATTATCTGATAGGTCGGGCCCTTGGTCCAGAAGTTGGAGTTAGCATTGGGCTATGTTTCTTTCTCGGAAATGCAGTTGCTGGTGCTCTTTATGTCTTGGGAGCTGTAGAAACATTTCTGAATGCTGTACCAGCTGCAGGGATATTCAGAGAGACTGTAACGAAGGTTAATGGAACAACTGTTGCAGAACCTATACTAAGTCCAAGTTCACATGACTTGCAAATTTATGGCATTATTGTGACGATTCTTCTGTGCTTCATTGTGTTTGGTGGTGTGAAAATGATTAATAGGGTTGCTCCTGCTTTCCTTATTCCAGTCTTGTTCTCATTAGTCTGCATATTTCTTGGAATTGTTCTGGCAAAGAAAAACGACCCTGCAGATGGCGTCACTGGCTTGAGTTTGGAATCTTTTAAAGAAAATTGGAGTTCTGATTATCAGATGACTAACAGTGCTGGAATTCCGGATCCTTTTGGAAAAGTTTATTGGAATTTCAATGCATTGGTTGGTCTTTTTTTCCCTGCTGTGACGGGAATAATGGCTGGCTCTAATAGATCAGCTTCACTGAAGGATACTCAGCGTTCCATTCCTATCGGAACATTGGCTGCGACTCTTACAACAACTGTAATGTATCTGGTCTCTGTGCTGCTGTTTGGAGCACTGGCAACCAGACAGAAACTTTTAACAGATAGGCTTCTTACAGCTACGGTTGCGTGGCCTTTCCCAGCAATTATATATGTTGGAATTATTTTATCAACCCTAGGAGCTGCTCTTCAGAGCCTGACAGGAGCCCCTCGCTTACTAGCAGCCATAGCCAATGATGATATATTGCCCATTCTAAACTATTTTAAAGTAGCCGACGGCAGTGAGCCACACATTGCAACCCTCTTTACTGCATTTCTCTGCATCGGATGTGTCGTAATTGGAAATCTTGATCTTATCACACCAACCGTAACTATGTTTTTCCTTTTATGCTATGCTGGTGTCAACTTATCCTGCTTCCTTTTGGATCTACTAGATGCTCCCAGTTGGCGTCCACGATGGAGATTCCATCACTGGAGTCTCTCTCTTCTTGGAGCAACACTTTGTATAGTGATAATGTTCTTGATCTCATGGTCATTCACGATAGTCGCTCTAGGCCTTGCAAGCCTTATATATTATTATGTGTGCCTTAGAGGTAAGGCTGGGGACTGGGGTGATGGTTTCAAGAGTGCATATTTCCAACTTGCTCTCCGAAGCCTTCGTTCACTTGGAGCGAGCCAAGTTCACCCAAAGAATTGGTACCCCATTCCCTTGATATTTTGCCGGCCATGGGGTAAGCTGCCAGAGAATGTACCCTGTCACCCTAAACTTGCAGACTTTGCAAACTGCATGAAGAAAAAAGGCCGTGGAATGTCCATATTTGTCTCCATACTAGATGGAGATTACCATGAGCGGGTTGAAGATGCCAAAGCTGCCTGCAAGCAACTTGCTACATATATTGATTACAAACGTTGCGAAGGCGTGGCAGAGATCGTTGTGGCTCCCTCAATGTCCGAGGGTTTCAGGGGGATTGTTCAGACCATGGGTCTTGGAAATCTCAAACCGAATATTGTAGTCATGCGATACCCGGAAATATGGCGTCGCGAAAATCTAACCGAGATTCCTGCTACTTTTGTTGGTATAATTAATGATTGCCTTGATGCTAACAAGGCGGTTGTCATTGTTAAGGGTCTTGATGAATGGCCTAATGAATTTCAGAGGCAGTATGGAACGATAGACTTGTATTGGATTGTGAGGGATGGTGGTCTTATGCTTCTCCTCTCTCAGCTTCTCCTTACAAAAGAAAGCTTTGAAAGCTGTAAGATTCAGGTGTTCTGCATTGCAGAGGAAGATTCTGATGCCGAGGGCCTCAAAGCTGATGTCAAAAAGTTTTTGTACGATCTTCGGATGCAAGCTGAGGTTATCGTTATAACGATAAAATCGTGGGACACACAAGTGGAGGGCGGGCAACAAGACGAATCAACGCAAGCGTTCACCGCTGCTCAAGGGAGGATTGCTAGTTATTTAGGTGAAATGAAGGCAGCAGCTGAGAGCAGAGGAACCACACTAATGGCGGATGGAAAGCCAGTCAGTGTGAATGAGCAGCAGGTTGAAAAGTTTCTTGATACGACTCTCAAGTTGAACTCGACAATTCTGAGATACTCGAGGATGGCTACAGTCGTGCTCGTGAGCCTCCCGCCACCTCCTGTCAACCATCCTGCATACTTTTACATGGAGTACTTGGATTTGTTGGTCGAGAATGTGCCTAGGCTCTTGATCGTAAGAGGATACCGAAGAGATGTCGTAACGTTGTACACGTAG 2532 44.31 MGVFIPCLQNILGIIYYIRFSWIVGMAGIGESLVLVAFCGLCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGALYVLGAVETFLNAVPAAGIFRETVTKVNGTTVAEPILSPSSHDLQIYGIIVTILLCFIVFGGVKMINRVAPAFLIPVLFSLVCIFLGIVLAKKNDPADGVTGLSLESFKENWSSDYQMTNSAGIPDPFGKVYWNFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTVMYLVSVLLFGALATRQKLLTDRLLTATVAWPFPAIIYVGIILSTLGAALQSLTGAPRLLAAIANDDILPILNYFKVADGSEPHIATLFTAFLCIGCVVIGNLDLITPTVTMFFLLCYAGVNLSCFLLDLLDAPSWRPRWRFHHWSLSLLGATLCIVIMFLISWSFTIVALGLASLIYYYVCLRGKAGDWGDGFKSAYFQLALRSLRSLGASQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHERVEDAKAACKQLATYIDYKRCEGVAEIVVAPSMSEGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDCLDANKAVVIVKGLDEWPNEFQRQYGTIDLYWIVRDGGLMLLLSQLLLTKESFESCKIQVFCIAEEDSDAEGLKADVKKFLYDLRMQAEVIVITIKSWDTQVEGGQQDESTQAFTAAQGRIASYLGEMKAAAESRGTTLMADGKPVSVNEQQVEKFLDTTLKLNSTILRYSRMATVVLVSLPPPPVNHPAYFYMEYLDLLVENVPRLLIVRGYRRDVVTLYT 843
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 38539621 38550761 - Sed0018861.1 Sed08g2636 724412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2636 843 PANTHER SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS 1 843 IPR004842 GO:0006811(InterPro)|GO:0006884(PANTHER)|GO:0015377(InterPro)|GO:0015379(PANTHER)|GO:0016020(InterPro)|GO:0055064(PANTHER)|GO:0055075(PANTHER)|GO:1902476(PANTHER)|GO:1990573(PANTHER)
Sed08g2636 843 Gene3D Amino acid/polyamine transporter I 1 460 - -
Sed08g2636 843 FunFam Cation-chloride cotransporter 1 1 460 - -
Sed08g2636 843 Pfam Solute carrier family 12 642 842 IPR018491 GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0022857(InterPro)
Sed08g2636 843 Pfam Solute carrier family 12 512 633 IPR018491 GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0022857(InterPro)
Sed08g2636 843 Pfam Amino acid permease 2 470 IPR004841 GO:0016020(InterPro)|GO:0055085(InterPro)
Sed08g2636 843 NCBIfam K-Cl cotransporter 1 843 IPR004842 GO:0006811(InterPro)|GO:0015377(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1860 Sed-Chr1:13803649 Sed08g2636 Sed-Chr8:38539621 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2636 K14427 - csv:101216218 1594.71