Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2640 ATGCAATTGTTTTCTCTTCCGACCATGTCTTTTAGCCGCTCGATGCGCTCCCAATCCCTCGCAAACCCGCCGCCGTTGGCCGAGAAAATCACCGACGAGCCGATCACAACCAAAACCGCCCAGAGCACCGTCACCTGCTTCTACCACGCCAGCATCGCCGGATTCTGGCGCAACGTCACCGTCCTCTGGTCCAAGAACCTCATGAACCACACCCTGACCATCACCATCCAGACTCTCGACGGCGATTTCCACTGCAACTACAAGATCGATGTCAAACCCTGGCACTTCTGGAGCAAGAAGGGATTCAAATCCCTAGATCTCGACGGCAACCAGATCGACATCTACTGGGACGTCCGATCCGCCAAATTCGCCAACGGCCCCGAGCCTCACTCCGATTTCTACGTCGCCTTGGTCGCCGACGAGGAGGTCGTCCTCCTCCTCGGCGACTACAAGAAGAAAGCCTACAAGCGAACCAAATCGCGGCCTGCGATCGTCGAATCGCTGCTGGTTTACAAGAAGGAGAACGTGTTCGCGAAGAAATGCTTCTCGACGAGGGCGAGGTTCGACGACCGCCGGAAGGAATCGGACATCGTCGTCGAGATCTCCACCTCCGGCGCCAAAGACCCGGAGATGTGGATCAGTATCGACGGGATTGTTCTGGTTCAGGTCAAGAACTTGCAGTGGAAATTTCGGGGCAACCAAACGGTTCAGGTTAATAAGCAGTCGGTTCAGGTCCTGTGGGACGTTCATGATTGGCTTTTTACCAACCCGGGTACGGGTCATGGGCTTTTTATTTTCAAACCCGGCCCGCCTGATTGTGAGAGTGACAAGGAAGGGAGCGCCGGCGGCGGCAGCAGTGGCGGCGGCGCGTTGGACGCGAGTGAGGATGGGAGCGTTTATTACTCGGCTCAACAGAGCGAGTTCTGCCTTTTCCTTTATGCGTGGAAATTGGAATAA 957 55.8 MQLFSLPTMSFSRSMRSQSLANPPPLAEKITDEPITTKTAQSTVTCFYHASIAGFWRNVTVLWSKNLMNHTLTITIQTLDGDFHCNYKIDVKPWHFWSKKGFKSLDLDGNQIDIYWDVRSAKFANGPEPHSDFYVALVADEEVVLLLGDYKKKAYKRTKSRPAIVESLLVYKKENVFAKKCFSTRARFDDRRKESDIVVEISTSGAKDPEMWISIDGIVLVQVKNLQWKFRGNQTVQVNKQSVQVLWDVHDWLFTNPGTGHGLFIFKPGPPDCESDKEGSAGGGSSGGGALDASEDGSVYYSAQQSEFCLFLYAWKLE 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 38574720 38576279 - Sed0012196.1 Sed08g2640 724416

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2640 318 Pfam Plant protein of unknown function (DUF868) 40 316 IPR008586 -
Sed08g2640 318 PANTHER EXPRESSED PROTEIN 29 316 IPR008586 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2640 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2655 Sed-Chr3:42780746 Sed08g2640 Sed-Chr8:38574720 8.00E-64 dispersed
Sed05g1726 Sed-Chr5:31049048 Sed08g2640 Sed-Chr8:38574720 3.20E-34 dispersed
Sed08g2640 Sed-Chr8:38574720 Sed11g0242 Sed-Chr11:2179284 1.40E-55 dispersed
Sed08g2640 Sed-Chr8:38574720 Sed08g1631 Sed-Chr8:31439314 1.00E-55 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g496 . . . . . . . Bma12g01007 . . . . Car10g00168 . . . . . . . . . . . . . . . . . . . . Cone13ag0088 Cone19ag0091 . . . . . Blo15g00305 . . . . . . Sed08g2640 Cmo10g00197 . . . . . . . Bhi08g01181 Tan05g2690 Cmetu03g1526 . Hepe07g1730 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007139 1 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 37