Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2642 ATGTTAGGAGAGCTTGCTCGAGGATCGGACGGGGAGCTTGGAGAAGTAGCGGTGAATTCGAACTCGAATTCGAGTATGAGCAGTGATGGATGCAGCAGTTTCAGTCGTCTTTCGTTTGATGCTGCGATCGATTTTCCTAGATCTTCGCCGGAGAGTCTCGATTTGAAACCTCACCGTTCCTCTGATTTCGCTTACTCTGCTATTCGTCGCCGGAAATCCAAGCTTACTTTTCGCGATTTTCGTCTCCTCCGCCGAATCGGCGCTGGCGACATTGGTACTGTGTATTTGTGTCGGTTGCGGAGCTTTGCGGACGGTTGCTACGGCGATGATGAGGAGGATGATCCGTGTCTGTACGCGATGAAGGTGGTGGATAAGGAGGCGTTGGAGTTGAAGAAGAAGGTGCAGAGAGCGGAAATGGAGAGGAAGATTTTGAAGATGCTGGATCATCCGTTTTTGCCTACTCTATACGCTGAGTTTGAGGCTTCTCATTTCTCTTGTATTGTTATGGAGTTCTGTTCCGGCGGCGACTTGCATTCTCTCCGCCATAAACAGCCGCGCAAACGCTTCTCTCTCAGCTCCGCAAGGTTTTATGCTGCTGAAGTTCTCGTTGCTTTAGAGTACCTTCATATGCTTGGAATCATTTATAGAGATCTTAAGCCGGAGAATGTCCTCGTCCGATCCGACGGTCACATCATGCTGTCGGATTTCGATCTATCTCTCTGCTCCGACGCCACCCCCGCCGTTGAATCGCCGGCTTCCTCCCCAAATCCGGCCTCCCCTGAACCGGGGGCGCACCCTAGAAGCACCACGGTTCCTTCCACTTCCGCCACCACTACCCCATTTTCCTGCCTCTTCAAACGCCTTTTCCGGTCACGCAAGGTTCAAACCGTGACACCCAACTGGCTCTTTGTGGCCGAACCCGTCTCCGCTAGGTCTTGCTCCTTCGTCGGGACTCACGAGTATGTCTCGCCGGAAGTTGCCGCCGGTGGGTCTCATGGCAACGCCGTCGACTGGTGGGCTTTTGGGATATTTCTCTACGAATTGATTTATGGACGGACGCCCTTCGCAGCCTCATCCAATGAAGTTACGTTGAGAAACATTATAAAGCTGCCGGTGATGTTTCCGACTGGTGCGTCCTCTAGTACACTTGAGCACCATGCGCGAGACTTAATATCGGGTTTGCTTAACAAGGACCCGACTCGAAGACTCGGTTCGAAACGCGGATCTGCCGACATTAAGAAGCATCCATTCTTTAAGAGTCTCAACTTCGCTCTTATTCGGTCGCTTACGCCGCCGGAGATTCCCGGCCTACAACGACGGAAGACGATGCCAACGCCGGCATCGAAACAGAAGGATAAGACGATTTATTCAGCCGGGTTTGATTTGTTTTGA 1392 52.01 MLGELARGSDGELGEVAVNSNSNSSMSSDGCSSFSRLSFDAAIDFPRSSPESLDLKPHRSSDFAYSAIRRRKSKLTFRDFRLLRRIGAGDIGTVYLCRLRSFADGCYGDDEEDDPCLYAMKVVDKEALELKKKVQRAEMERKILKMLDHPFLPTLYAEFEASHFSCIVMEFCSGGDLHSLRHKQPRKRFSLSSARFYAAEVLVALEYLHMLGIIYRDLKPENVLVRSDGHIMLSDFDLSLCSDATPAVESPASSPNPASPEPGAHPRSTTVPSTSATTTPFSCLFKRLFRSRKVQTVTPNWLFVAEPVSARSCSFVGTHEYVSPEVAAGGSHGNAVDWWAFGIFLYELIYGRTPFAASSNEVTLRNIIKLPVMFPTGASSSTLEHHARDLISGLLNKDPTRRLGSKRGSADIKKHPFFKSLNFALIRSLTPPEIPGLQRRKTMPTPASKQKDKTIYSAGFDLF 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 38606246 38608699 + Sed0017181.1 Sed08g2642 724418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2642 463 FunFam protein kinase PINOID 172 240 - -
Sed08g2642 463 Pfam Protein kinase domain 312 418 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g2642 463 Pfam Protein kinase domain 81 261 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g2642 463 FunFam protein kinase PINOID 2 78 171 - -
Sed08g2642 463 Gene3D Transferase(Phosphotransferase) domain 1 311 436 - -
Sed08g2642 463 FunFam serine/threonine-protein kinase D6PK-like 310 436 - -
Sed08g2642 463 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g2642 463 Gene3D Phosphorylase Kinase; domain 1 78 171 - -
Sed08g2642 463 MobiDBLite consensus disorder prediction 247 277 - -
Sed08g2642 463 ProSiteProfiles Protein kinase domain profile. 80 418 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g2642 463 Coils Coil 120 147 - -
Sed08g2642 463 Gene3D Transferase(Phosphotransferase) domain 1 172 240 - -
Sed08g2642 463 SUPERFAMILY Protein kinase-like (PK-like) 59 436 IPR011009 -
Sed08g2642 463 PANTHER FLIPPASE KINASE 1-RELATED 38 439 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Sed08g2642 463 SMART serkin_6 80 418 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2642 Sed-Chr8:38606246 Sed11g0101 Sed-Chr11:933784 4.50E-100 dispersed
Sed01g1856 Sed-Chr1:13721729 Sed08g2642 Sed-Chr8:38606246 6.20E-214 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79715 PF00069 Pkinase 1.50E-32 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2642 - - - 0.0