Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed08g2642 | ATGTTAGGAGAGCTTGCTCGAGGATCGGACGGGGAGCTTGGAGAAGTAGCGGTGAATTCGAACTCGAATTCGAGTATGAGCAGTGATGGATGCAGCAGTTTCAGTCGTCTTTCGTTTGATGCTGCGATCGATTTTCCTAGATCTTCGCCGGAGAGTCTCGATTTGAAACCTCACCGTTCCTCTGATTTCGCTTACTCTGCTATTCGTCGCCGGAAATCCAAGCTTACTTTTCGCGATTTTCGTCTCCTCCGCCGAATCGGCGCTGGCGACATTGGTACTGTGTATTTGTGTCGGTTGCGGAGCTTTGCGGACGGTTGCTACGGCGATGATGAGGAGGATGATCCGTGTCTGTACGCGATGAAGGTGGTGGATAAGGAGGCGTTGGAGTTGAAGAAGAAGGTGCAGAGAGCGGAAATGGAGAGGAAGATTTTGAAGATGCTGGATCATCCGTTTTTGCCTACTCTATACGCTGAGTTTGAGGCTTCTCATTTCTCTTGTATTGTTATGGAGTTCTGTTCCGGCGGCGACTTGCATTCTCTCCGCCATAAACAGCCGCGCAAACGCTTCTCTCTCAGCTCCGCAAGGTTTTATGCTGCTGAAGTTCTCGTTGCTTTAGAGTACCTTCATATGCTTGGAATCATTTATAGAGATCTTAAGCCGGAGAATGTCCTCGTCCGATCCGACGGTCACATCATGCTGTCGGATTTCGATCTATCTCTCTGCTCCGACGCCACCCCCGCCGTTGAATCGCCGGCTTCCTCCCCAAATCCGGCCTCCCCTGAACCGGGGGCGCACCCTAGAAGCACCACGGTTCCTTCCACTTCCGCCACCACTACCCCATTTTCCTGCCTCTTCAAACGCCTTTTCCGGTCACGCAAGGTTCAAACCGTGACACCCAACTGGCTCTTTGTGGCCGAACCCGTCTCCGCTAGGTCTTGCTCCTTCGTCGGGACTCACGAGTATGTCTCGCCGGAAGTTGCCGCCGGTGGGTCTCATGGCAACGCCGTCGACTGGTGGGCTTTTGGGATATTTCTCTACGAATTGATTTATGGACGGACGCCCTTCGCAGCCTCATCCAATGAAGTTACGTTGAGAAACATTATAAAGCTGCCGGTGATGTTTCCGACTGGTGCGTCCTCTAGTACACTTGAGCACCATGCGCGAGACTTAATATCGGGTTTGCTTAACAAGGACCCGACTCGAAGACTCGGTTCGAAACGCGGATCTGCCGACATTAAGAAGCATCCATTCTTTAAGAGTCTCAACTTCGCTCTTATTCGGTCGCTTACGCCGCCGGAGATTCCCGGCCTACAACGACGGAAGACGATGCCAACGCCGGCATCGAAACAGAAGGATAAGACGATTTATTCAGCCGGGTTTGATTTGTTTTGA | 1392 | 52.01 | MLGELARGSDGELGEVAVNSNSNSSMSSDGCSSFSRLSFDAAIDFPRSSPESLDLKPHRSSDFAYSAIRRRKSKLTFRDFRLLRRIGAGDIGTVYLCRLRSFADGCYGDDEEDDPCLYAMKVVDKEALELKKKVQRAEMERKILKMLDHPFLPTLYAEFEASHFSCIVMEFCSGGDLHSLRHKQPRKRFSLSSARFYAAEVLVALEYLHMLGIIYRDLKPENVLVRSDGHIMLSDFDLSLCSDATPAVESPASSPNPASPEPGAHPRSTTVPSTSATTTPFSCLFKRLFRSRKVQTVTPNWLFVAEPVSARSCSFVGTHEYVSPEVAAGGSHGNAVDWWAFGIFLYELIYGRTPFAASSNEVTLRNIIKLPVMFPTGASSSTLEHHARDLISGLLNKDPTRRLGSKRGSADIKKHPFFKSLNFALIRSLTPPEIPGLQRRKTMPTPASKQKDKTIYSAGFDLF | 463 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 38606246 | 38608699 | + | Sed0017181.1 | Sed08g2642 | 724418 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed08g2642 | 463 | FunFam | protein kinase PINOID | 172 | 240 | - | - | |
Sed08g2642 | 463 | Pfam | Protein kinase domain | 312 | 418 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed08g2642 | 463 | Pfam | Protein kinase domain | 81 | 261 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed08g2642 | 463 | FunFam | protein kinase PINOID 2 | 78 | 171 | - | - | |
Sed08g2642 | 463 | Gene3D | Transferase(Phosphotransferase) domain 1 | 311 | 436 | - | - | |
Sed08g2642 | 463 | FunFam | serine/threonine-protein kinase D6PK-like | 310 | 436 | - | - | |
Sed08g2642 | 463 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 213 | 225 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed08g2642 | 463 | Gene3D | Phosphorylase Kinase; domain 1 | 78 | 171 | - | - | |
Sed08g2642 | 463 | MobiDBLite | consensus disorder prediction | 247 | 277 | - | - | |
Sed08g2642 | 463 | ProSiteProfiles | Protein kinase domain profile. | 80 | 418 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed08g2642 | 463 | Coils | Coil | 120 | 147 | - | - | |
Sed08g2642 | 463 | Gene3D | Transferase(Phosphotransferase) domain 1 | 172 | 240 | - | - | |
Sed08g2642 | 463 | SUPERFAMILY | Protein kinase-like (PK-like) | 59 | 436 | IPR011009 | - | |
Sed08g2642 | 463 | PANTHER | FLIPPASE KINASE 1-RELATED | 38 | 439 | - | GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER) | |
Sed08g2642 | 463 | SMART | serkin_6 | 80 | 418 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed08g2642 | Sed-Chr8:38606246 | Sed11g0101 | Sed-Chr11:933784 | 4.50E-100 | dispersed | |
Sed01g1856 | Sed-Chr1:13721729 | Sed08g2642 | Sed-Chr8:38606246 | 6.20E-214 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79715 | PF00069 | Pkinase | 1.50E-32 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed08g2642 | - | - | - | 0.0 |