Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2648 ATGAGGCTCTCTGGTTTTAGTCCTCAGGCTCTTGAAGGTGAGAGGAGGGTCCTGAATTCCGAGCTATGGCATGCGTGTGCCGGTCCTCTCGTTTCTCTCCCGGCGGTCGGCAGTCGGGTTGTTTATTTTCCTCAAGGTCATAGTGAGCAGGTTGCTGCATCTACCAATAAAGAGGTGGATGCCCAGATCCCGAGTTACCCGAGTCTACCGCCGCAGCTCATCTGTCAACTTCACAACTTGACAATGCATGCTGATGCTGAGACAGATGAAGTGTATGCTCAGATGACTCTGCAACCCTTGAGTGCTCAAGAACTGAAGGAAGCCTACCTTCCAGCTGAGTTGGGCTCTCCGAACAGGCAGCCAACAAACTATTTTTGCAAAACTTTGACAGCCAGTGATACCAGCACACATGGAGGCTTTTCTGTTCCTCGCCGTGCCGCAGAAAAAGTATTTCCCCCTTTGGACTTCTCCATGCAGCCTCCGGCTCAAGAGCTGATAGCGAGGGACCTACACGATAATGAGTGGAAATTTAGGCATATATTTCGTGGCCAGCCTAAAAGACACCTTCTAACAACTGGATGGAGCATCTTCGTGAGCGCTAAAAGACTCGTCGCTGGTGATGCCGTGCTTTTTATCTGGAACGAAAAGAATCAATTATTCCTTGGAATTAGGCGTGCAAGTCGACCGCAAACCGTGATGCCTTCATCCGTTTTGTCAAGTGATAGCATGCATCTAGGACTTCTTGCCGCTGCAGCTCATGCAGCTGCTACCAATAGTCGGTTTACCATATTTTTTAACCCAAGGGCTAGCCCTTCAGAGTTTGTCATACCATTGGCCAAATATGTGAAGGCAGTCTACCATACTCGTGTTTCTGTTGGGTTGCGCTTTAGGATGCTGTTCGAAACAGAAGAATCAAGTGTTCGTCGCTACATGGGAACAATCACGGGCATTTGTGATTTGGATTCTGTAAGATGGCAAAATTCACATTGGCGCTCGGTCAAGGTTGGCTGGGACGAGTCAACAGCAGGAGAACGACAGCCAAGAGTGTCCTTGTGGGAAATCGAGCCCTTGACATCATTTCCAATGTATCCATCACCATTCCCACTTCGGCTGAAGCGACCATGGCCGACCGGACTGCCTTCTTTTGGCATCAAAGATAATGACCTTGGAATGAATTCTCCATTCATGTGGCTACGTGGAGATAATAGTGATCGCGGTATCCATTGTCTGAACTTTCAGGGAACTGGGGTCTCACCATGGATGCATCCGAGGCTTGATACATCCATGGTCGGTATGCAGCCTGACGTATATCAAGCCATGGCAGCTGCGGCTCTTCAGGAGATGAGGGCGGTTGATTATTCGAAAATAGCACCTGCATCTATTCTGCAATTCCAGCAGTCACAAGGTCTCTCTTGTCAGTCTTCTACCTTTTTGGAGCCTCAGATGTTGCATCAGTCTCAACCTCAGCAGGTGTTTATGCAAACCGTTCAAGAAAACCAGCAGCATTCTCAGCCTCCGGCTCAAACTCAGTCACATCATCTTCAGCCACAATTGCAGACCCAGCAGTCATTCAATAATCAACAACAACTCCATCAACAGCAGCCAAGGCAACCACAACCACTAGTTGATAACCAACCAATTCCTTGTCCAATCCCTGCTATATCGCAGTTTGCTTCATGTCCACAATCCCAATCACTGTCCCTGCAAACCGTCCCATCCCTTTGCCAACAACCAAGCTTTTCTGAGTCCAATGCTAATCCTGTAACTAGTTCTACTGTTTCCCCATTGCATAGCCTTGCTGGGTCATTTGTCCAGGACGAATCGTCTCAGCTGCTTAATGTTCAACGAGCAAATTCCATAATTCCTTCATCTGGCTGGCCATCAAAGAGAGCTGCTATTGACCCTCTCTCTACTGGAGCTTCTCAGTATTTTTTACCTCAATTGGAAAACTTAGGAACATTACAGAGTAGTATTTCTCATAATACAGTTGCATTGCCACCTTTCCCTGGAAAGGAGTGTTCTATTGATGATCGAGATGAGGGTTCTGATCTACAAAACCATGTTTTATTTGGTGTTAATATAGAGTCTTCATCCCTTCTAATGCAGAATGGGATGTCAAATCTTAGGGGAGTCTGCAATGATAATGTTTCTACAACTCTACCTTTTTCTTCCAACTACATGAGCTCTGGTGGTACCAATTTCTCTATAAATCCAACGATGACGTCCTCGAATTGCATTGATGAATCAGGTTTCCTGCAGTCTAATGAAAATGTGGGCCAAGTAATCCCACCAAATGGAACCTTTGTCAAGGTTCATAAATCAGGGACCTACAGTAGGTCGTTAGACATAACCAAATTCAACAACTATCCTGAGCTACGCAGCGAGCTTGCTCGCATGTTTGGCTTAGAAGGTGAGTTGGAGGATCCATTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGGGAGAACGATGTTCTTCTCCTCGGGGATGGCCCGTGGCCGGAGTTTGTAAACAGTGTATCATATATCAAAATACTTTCACCAGAAGAAGTTCAGGAAATGGGGAAACAAGGTTTAGAACTTCTTAACTCTGTGCCAATCCAGAGGCTCTCAAACAGCACCTGCGACGACTATGGTAGCCGACAGGACTCGAGAAACTTGATTTCAGGGATAACCTCTGTCGGGCCTCTCGACTACTGA 2700 46.85 MRLSGFSPQALEGERRVLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEVDAQIPSYPSLPPQLICQLHNLTMHADAETDEVYAQMTLQPLSAQELKEAYLPAELGSPNRQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSMQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSIFVSAKRLVAGDAVLFIWNEKNQLFLGIRRASRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFFNPRASPSEFVIPLAKYVKAVYHTRVSVGLRFRMLFETEESSVRRYMGTITGICDLDSVRWQNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTSFPMYPSPFPLRLKRPWPTGLPSFGIKDNDLGMNSPFMWLRGDNSDRGIHCLNFQGTGVSPWMHPRLDTSMVGMQPDVYQAMAAAALQEMRAVDYSKIAPASILQFQQSQGLSCQSSTFLEPQMLHQSQPQQVFMQTVQENQQHSQPPAQTQSHHLQPQLQTQQSFNNQQQLHQQQPRQPQPLVDNQPIPCPIPAISQFASCPQSQSLSLQTVPSLCQQPSFSESNANPVTSSTVSPLHSLAGSFVQDESSQLLNVQRANSIIPSSGWPSKRAAIDPLSTGASQYFLPQLENLGTLQSSISHNTVALPPFPGKECSIDDRDEGSDLQNHVLFGVNIESSSLLMQNGMSNLRGVCNDNVSTTLPFSSNYMSSGGTNFSINPTMTSSNCIDESGFLQSNENVGQVIPPNGTFVKVHKSGTYSRSLDITKFNNYPELRSELARMFGLEGELEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVSYIKILSPEEVQEMGKQGLELLNSVPIQRLSNSTCDDYGSRQDSRNLISGITSVGPLDY 899
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 38656979 38663510 + Sed0005645.1 Sed08g2648 724424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2648 899 ProSiteProfiles PB1 domain profile. 766 850 IPR053793 -
Sed08g2648 899 CDD B3_DNA 124 220 IPR003340 GO:0003677(InterPro)
Sed08g2648 899 MobiDBLite consensus disorder prediction 496 548 - -
Sed08g2648 899 FunFam Auxin response factor 123 227 - -
Sed08g2648 899 SUPERFAMILY DNA-binding pseudobarrel domain 110 254 IPR015300 -
Sed08g2648 899 SMART B3_2 125 227 IPR003340 GO:0003677(InterPro)
Sed08g2648 899 MobiDBLite consensus disorder prediction 496 540 - -
Sed08g2648 899 Pfam Auxin response factor 251 333 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Sed08g2648 899 ProSiteProfiles B3 DNA-binding domain profile. 125 227 IPR003340 GO:0003677(InterPro)
Sed08g2648 899 SUPERFAMILY CAD & PB1 domains 758 842 - -
Sed08g2648 899 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 18 858 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Sed08g2648 899 FunFam Auxin response factor 763 855 - -
Sed08g2648 899 Pfam B3 DNA binding domain 125 226 IPR003340 GO:0003677(InterPro)
Sed08g2648 899 Gene3D - 289 362 - -
Sed08g2648 899 Gene3D - 764 855 - -
Sed08g2648 899 Gene3D - 123 226 IPR015300 -
Sed08g2648 899 FunFam Auxin response factor 289 361 - -
Sed08g2648 899 Pfam AUX/IAA family 764 852 IPR033389 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2495 Sed-Chr1:18647969 Sed08g2648 Sed-Chr8:38656979 3.60E-168 dispersed
Sed05g2845 Sed-Chr5:39588931 Sed08g2648 Sed-Chr8:38656979 1.60E-71 dispersed
Sed08g2648 Sed-Chr8:38656979 Sed13g1578 Sed-Chr13:20953766 2.20E-167 dispersed
Sed01g1691 Sed-Chr1:12293061 Sed08g2648 Sed-Chr8:38656979 0.00E+00 transposed
Sed14g1598 Sed-Chr14:24132416 Sed08g2648 Sed-Chr8:38656979 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39458 PF02309 AUX_IAA 9.30E-07 CL0072 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2648 K14486 - csv:101211705 1573.53