Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2652 ATGGACGGCGGCGCTGGGCGGTTGAAGGCGTCGAGTTCCGGCAATGGCGGTGGTAGAACCCGCGTGGGGAAATACCAGTTGGGTAAAACCCTAGGCGAGGGGAATTTCGCTAAGGTCAAATTTGCTCGGAATTTGGAGACTGGCGATAGCGTGGCGATTAAGATTCTCGATAAGGAGAAGGTTCTTAAGCACAAGATGATCACTCAGATTAAACGTGAGATATCAACAATGAAATTAATTAGGCATCCTAATGTCATCCGTATGTTTGAGGTGATGGCTAGCAAGACCAAAATATATATTGTGTTGGAGTTTGTCACTGGTGGTGAATTATTTGACAAGATTGTTAGTAAAGGCAGGATGAAGGAAGATGAAGTAAGAAAGTATTTTCAGCAGCTTATTAATGCAGTGGACTATTGTCACAGTAGAGGTGTTTTTCACAGAGACTTAAAGCCGGAGAATTTGCTGCTTGATGCTAACGGCGTTCTTAAAGTTTCAGATTTTGGTTTGAGCGCACTACCTCAGCAAGTTCGAGAAGATGGATTGCTTCACACGACATGTGGGACACCAAATTATGTCGCTCCAGAGGTGATCAATAACAAAGGCTATGACGGGGCAAAGGCTGATTTGTGGTCATGTGGTGTAATTCTTTTTGTCTTGATGGCTGGTTATTTACCTTTTGAAGATTCCAACTTGGTTGCATTATATAAGAAGATACACAAGGCTGATTTCACTTGTCCACCATGGTTCTCTACAAACGCAAAGAAACTTATCAAAAGAATTCTGGATCCCAACCCCTCAACGAGAATTACCATCCCGGAGGTGATTGAAAATGAATGGTTTAGAAAAGGTTATAAGCCGCCCACTTTTGAACAAGCTGATATTAGTCTTGATGATGTAGATGCTATCTTCAATGAAACAGGGGATTCGGGTAGTCTCATTGTGGAAAGGAAGGAGGAAGGACCTACTGCCCCTCTTACGATGAATGCATTTGAGCTCATCTCTAAATCTCAAGGCCTCAACCTCAGTTCTCTTTTTGAGAAACAGATGGGGATCGTTAAACGGGAAACAAGGTTCACATCCAATCGACCTGCTAAAGAGATCCTGTCTAAAATTGAGGAAACTGCAACACCTTTGGGTTTTGGTGTGAAGAAAAATAACTACAAGATGAAACTTCAAGGTGAAAAAACAGGTCGTAAGGGCCATTTATCAGTTGCAACAGAGATTTATGAGGTTGCTCCGTCTCTGTGCATGGTTGAGGTCCGCAAGGCTGAAGGAGATACATTAGAATTTCACAAGTTTTATAAGAACCTCAAGACTGGGCTCGATGACATAGTCTGGAAACATGAAGAGGATGCAGATGGAGATAGTGGTGCAAGTGTGTCAAAGGCAAGGTAA 1395 42.72 MDGGAGRLKASSSGNGGGRTRVGKYQLGKTLGEGNFAKVKFARNLETGDSVAIKILDKEKVLKHKMITQIKREISTMKLIRHPNVIRMFEVMASKTKIYIVLEFVTGGELFDKIVSKGRMKEDEVRKYFQQLINAVDYCHSRGVFHRDLKPENLLLDANGVLKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVINNKGYDGAKADLWSCGVILFVLMAGYLPFEDSNLVALYKKIHKADFTCPPWFSTNAKKLIKRILDPNPSTRITIPEVIENEWFRKGYKPPTFEQADISLDDVDAIFNETGDSGSLIVERKEEGPTAPLTMNAFELISKSQGLNLSSLFEKQMGIVKRETRFTSNRPAKEILSKIEETATPLGFGVKKNNYKMKLQGEKTGRKGHLSVATEIYEVAPSLCMVEVRKAEGDTLEFHKFYKNLKTGLDDIVWKHEEDADGDSGASVSKAR 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 38683291 38692300 - Sed0019082.1 Sed08g2652 724428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2652 464 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524(InterPro)
Sed08g2652 464 ProSiteProfiles Protein kinase domain profile. 25 280 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g2652 464 CDD CIPK_C 328 437 - -
Sed08g2652 464 MobiDBLite consensus disorder prediction 1 21 - -
Sed08g2652 464 SMART serkin_6 25 280 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g2652 464 FunFam Non-specific serine/threonine protein kinase 17 104 - -
Sed08g2652 464 CDD STKc_SnRK3 24 279 - -
Sed08g2652 464 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g2652 464 SUPERFAMILY Protein kinase-like (PK-like) 22 291 IPR011009 -
Sed08g2652 464 Gene3D Kinase associated domain 1, KA1 327 447 - -
Sed08g2652 464 FunFam Non-specific serine/threonine protein kinase 18 321 - -
Sed08g2652 464 Pfam NAF domain 324 384 IPR004041 GO:0007165(InterPro)
Sed08g2652 464 FunFam Non-specific serine/threonine protein kinase 321 447 - -
Sed08g2652 464 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 16 435 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Sed08g2652 464 ProSiteProfiles NAF domain profile. 322 346 IPR018451 GO:0007165(InterPro)
Sed08g2652 464 Gene3D Transferase(Phosphotransferase) domain 1 19 326 - -
Sed08g2652 464 Pfam Protein kinase domain 25 280 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1699 Sed-Chr1:12347214 Sed08g2652 Sed-Chr8:38683291 1.40E-247 dispersed
Sed01g1700 Sed-Chr1:12347214 Sed08g2652 Sed-Chr8:38683291 2.90E-229 dispersed
Sed05g1040 Sed-Chr5:9096315 Sed08g2652 Sed-Chr8:38683291 2.90E-173 dispersed
Sed05g1041 Sed-Chr5:9096315 Sed08g2652 Sed-Chr8:38683291 2.90E-173 dispersed
Sed08g0682 Sed-Chr8:4883467 Sed08g2652 Sed-Chr8:38683291 1.00E-141 dispersed
Sed08g0683 Sed-Chr8:4883467 Sed08g2652 Sed-Chr8:38683291 1.00E-141 dispersed
Sed08g2652 Sed-Chr8:38683291 Sed12g0058 Sed-Chr12:321760 8.90E-181 dispersed
Sed12g0466 Sed-Chr12:2804489 Sed08g2652 Sed-Chr8:38683291 4.70E-12 dispersed
Sed12g0467 Sed-Chr12:2804489 Sed08g2652 Sed-Chr8:38683291 4.70E-12 dispersed
Sed08g2652 Sed-Chr8:38683291 Sed08g2653 Sed-Chr8:38683291 1.00E-248 tandem
Sed03g1436 Sed-Chr3:9128983 Sed08g2652 Sed-Chr8:38683291 1.30E-147 transposed
Sed14g1595 Sed-Chr14:24086252 Sed08g2652 Sed-Chr8:38683291 3.20E-207 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79716 PF00069 Pkinase 1.10E-74 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2652 - - - 0.0