Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2653 ATGGACGGCGGCGCTGGGCGGTTGAAGGCGTCGAGTTCCGGCAATGGCGGTGGTAGAACCCGCGTGGGGAAATACCAGTTGGGTAAAACCCTAGGCGAGGGGAATTTCGCTAAGGTCAAATTTGCTCGGAATTTGGAGACTGGCGATAGCGTGGCGATTAAGATTCTCGATAAGGAGAAGGTTCTTAAGCACAAGATGATCACTCAGATTAAACGTGAGATATCAACAATGAAATTAATTAGGCATCCTAATGTCATCCGTATGTTTGAGGTGATGGCTAGCAAGACCAAAATATATATTGTGTTGGAGTTTGTCACTGGTGGTGAATTATTTGACAAGATTGTTAGTAAAGGCAGGATGAAGGAAGATGAAGTAAGAAAGTATTTTCAGCAGCTTATTAATGCAGTGGACTATTGTCACAGTAGAGGTGTTTTTCACAGAGACTTAAAGCCGGAGAATTTGCTGCTTGATGCTAACGGCGTTCTTAAAGTTTCAGATTTTGGTTTGAGCGCACTACCTCAGCAAGTTCGAGAAGATGGATTGCTTCACACGACATGTGGGACACCAAATTATGTCGCTCCAGAGGTGATCAATAACAAAGGCTATGACGGGGCAAAGGCTGATTTGTGGTCATGTGGTGTAATTCTTTTTGTCTTGATGGCTGGTTATTTACCTTTTGAAGATTCCAACTTGGTTGCATTATATAAGAAGATACACAAGGCTGATTTCACTTGTCCACCATGGTTCTCTACAAACGCAAAGAAACTTATCAAAAGAATTCTGGATCCCAACCCCTCAACGAGAATTACCATCCCGGAGGTGATTGAAAATGAATGGTTTAGAAAAGGTTATAAGCCGCCCACTTTTGAACAAGCTGATATTAGTCTTGATGATGTAGATGCTATCTTCAATGAAACAGGGGATTCGGGTAGTCTCATTGTGGAAAGGAAGGAGGAAGGACCTACTGCCCCTCTTACGATGAATGCATTTGAGCTCATCTCTAAATCTCAAGGCCTCAACCTCAGTTCTCTTTTTGAGAAACAGATGGGGATCGTTAAACGGGAAACAAGGTTCACATCCAATCGACCTGCTAAAGAGATCCTGTCTAAAATTGAGGAAACTGCAACACCTTTGGGTTTTGGTGTGAAGAAAAATAACTACAAGATGAAACTTCAAGGTGAAAAAACAGGTCGTAAGGGCCATTTATCAGTTGCAACAGAGATTTATGAGGTTGCTCCGTCTCTGTGCATGGTTGAGGTCCGCAAGGCTGAAGGAGATACATTAGAATTTCACAAGAGATTTCGAAGGGGCATACTCTAG 1320 42.73 MDGGAGRLKASSSGNGGGRTRVGKYQLGKTLGEGNFAKVKFARNLETGDSVAIKILDKEKVLKHKMITQIKREISTMKLIRHPNVIRMFEVMASKTKIYIVLEFVTGGELFDKIVSKGRMKEDEVRKYFQQLINAVDYCHSRGVFHRDLKPENLLLDANGVLKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVINNKGYDGAKADLWSCGVILFVLMAGYLPFEDSNLVALYKKIHKADFTCPPWFSTNAKKLIKRILDPNPSTRITIPEVIENEWFRKGYKPPTFEQADISLDDVDAIFNETGDSGSLIVERKEEGPTAPLTMNAFELISKSQGLNLSSLFEKQMGIVKRETRFTSNRPAKEILSKIEETATPLGFGVKKNNYKMKLQGEKTGRKGHLSVATEIYEVAPSLCMVEVRKAEGDTLEFHKRFRRGIL 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 38683291 38692300 - Sed0019082.2 Sed08g2653 724429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2653 439 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524(InterPro)
Sed08g2653 439 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 16 435 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Sed08g2653 439 ProSiteProfiles Protein kinase domain profile. 25 280 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g2653 439 CDD CIPK_C 328 432 - -
Sed08g2653 439 MobiDBLite consensus disorder prediction 1 21 - -
Sed08g2653 439 SMART serkin_6 25 280 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g2653 439 Pfam NAF domain 324 384 IPR004041 GO:0007165(InterPro)
Sed08g2653 439 Gene3D Transferase(Phosphotransferase) domain 1 19 326 - -
Sed08g2653 439 CDD STKc_SnRK3 24 279 - -
Sed08g2653 439 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g2653 439 Gene3D Kinase associated domain 1, KA1 327 438 - -
Sed08g2653 439 FunFam Non-specific serine/threonine protein kinase 17 104 - -
Sed08g2653 439 SUPERFAMILY Protein kinase-like (PK-like) 22 291 IPR011009 -
Sed08g2653 439 FunFam Non-specific serine/threonine protein kinase 18 321 - -
Sed08g2653 439 FunFam Non-specific serine/threonine protein kinase 321 438 - -
Sed08g2653 439 ProSiteProfiles NAF domain profile. 322 346 IPR018451 GO:0007165(InterPro)
Sed08g2653 439 Pfam Protein kinase domain 25 280 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2653 Sed-Chr8:38683291 Sed14g1595 Sed-Chr14:24086252 1.30E-197 dispersed
Sed08g2652 Sed-Chr8:38683291 Sed08g2653 Sed-Chr8:38683291 1.00E-248 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79717 PF00069 Pkinase 9.50E-75 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2653 - - - 0.0