Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2668 ATGGCTTCCCTCTCTATTTTCCTTTTCTCATTCCTCCTTATCACAACCAGCTGCTTAGAAAGTAAAGAAATGGAAGAAGAAGAGCTTATGGGGCTATTTGAAGTAATGGGTTCTCTCTTAGATGACCCTGATTGGCCTCTATCTCACCCTTTGCCTTGCTCAGAGACTCCATGGCCTGGGCTCAAATGTGAAATTGGTCAAGCTCCTCCTTTGTTTCATGTCACCAAGATTCACATTGGCCCTGATATTCTAGACCCACCTTGCAAAACCTTTGCTAATTTGTCACATTCATTGCTCAAGCTCCCTTACTTGAAATCCCTTTCAATCTTCAGCTGTTTCACATCTTCATCAGTTTCTCTGTTTCCTGCCCTGTTTCAGTCACTGTCTTATTTAGAACATTTGGCTCTTCAATCCAATCCTTCTCTCTGTGGAGAGATCCCTTCAAGTTTAGGGAATGCAACAAGTTTGAGGGTTTTAAGCCTGTCCCAAAACAATCTAATGGGAGAAATCCCACAAGCCATTACTGGGTTGGTGTTTCTAGAACAGCTTGATCTCAGTTCCAACAAGTTAAGTGGTGAAGTTCCTCAAACCATTGGTGGGTTGAAAAGTTTGAGCATTTTGGACCTCAGTTGGAATGAACTCAAGGGTATGTTACCCTATTCTTTAGGACAGTTGCAGCTCCTCCAAAAGATTGATTTTCGCTCAAACAGGCTTGAAGGGAAGATACCTCCAAATTTAGGCATGTTGAAGAAATTGGTATTGCTTGATTTGAGCTACAACTTTATAAATGGGCCAATCCCTCAATCATTTGAAGGGTTGAAACATTTGGAGTATTTGATGTTAGACCACAATCCCTTGAATTGTGAAATTCCGTTAATTATAGAAAGCCTTGAGAAGCTCACATCAATGAGCCTATCAGACTGTGGAATTAAAGGTTCAATTCCCACTTCAATATCTTCTTTGAAAACCCTCACAGCTCTGTCTTTAGCCAACAACAATCTAAGTGGGACAGTTCCACAAGAATTGGGGAAACTTCCAAACTTGAATATGTTGAATTTGAGCCACAATCATCTAAGTGGAGAGGTTTCTTTCCCAAAAGAGTTTGTGAACAAACTTGGGAAAAGATTGGATTTAAGAGGAAATTATGGGCTGTGCTCAAGCCAAAAGCATAAGGAGATTGGATTTAAGAACAATATCTCAGTGAGTTCTGATGAAACACCAGATTGTTTGAATGACAGTGAAGAACAAGAAACAGCAGAAGATTGTAAGAGAATAGAGGCAGCTTGGAACCAATGGGAAGAAAACAGCTCTATTGCTACTAGTTATCCAAGTTGGGACAAAAATCTCATGCTTGCCTTTTGTTCTTTTGCTGTAGTAGTTGTTCTATGTTCTGGTTTATTGTAG 1404 40.1 MASLSIFLFSFLLITTSCLESKEMEEEELMGLFEVMGSLLDDPDWPLSHPLPCSETPWPGLKCEIGQAPPLFHVTKIHIGPDILDPPCKTFANLSHSLLKLPYLKSLSIFSCFTSSSVSLFPALFQSLSYLEHLALQSNPSLCGEIPSSLGNATSLRVLSLSQNNLMGEIPQAITGLVFLEQLDLSSNKLSGEVPQTIGGLKSLSILDLSWNELKGMLPYSLGQLQLLQKIDFRSNRLEGKIPPNLGMLKKLVLLDLSYNFINGPIPQSFEGLKHLEYLMLDHNPLNCEIPLIIESLEKLTSMSLSDCGIKGSIPTSISSLKTLTALSLANNNLSGTVPQELGKLPNLNMLNLSHNHLSGEVSFPKEFVNKLGKRLDLRGNYGLCSSQKHKEIGFKNNISVSSDETPDCLNDSEEQETAEDCKRIEAAWNQWEENSSIATSYPSWDKNLMLAFCSFAVVVVLCSGLL 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 38818058 38819461 - Sed0013177.1 Sed08g2668 724444

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2668 467 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 296 365 - -
Sed08g2668 467 PRINTS Leucine-rich repeat signature 180 193 - -
Sed08g2668 467 PRINTS Leucine-rich repeat signature 345 358 - -
Sed08g2668 467 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 206 316 - -
Sed08g2668 467 FunFam Piriformospora indica-insensitive protein 2 195 292 - -
Sed08g2668 467 SMART LRR_typ_2 177 200 IPR003591 -
Sed08g2668 467 SMART LRR_typ_2 201 224 IPR003591 -
Sed08g2668 467 SMART LRR_typ_2 345 370 IPR003591 -
Sed08g2668 467 SMART LRR_typ_2 249 272 IPR003591 -
Sed08g2668 467 Pfam Leucine Rich Repeat 155 177 IPR001611 GO:0005515(InterPro)
Sed08g2668 467 Gene3D Ribonuclease Inhibitor 270 398 IPR032675 -
Sed08g2668 467 FunFam Piriformospora indica-insensitive protein 2 26 194 - -
Sed08g2668 467 Gene3D Ribonuclease Inhibitor 32 196 IPR032675 -
Sed08g2668 467 Pfam Leucine rich repeat 249 286 IPR001611 GO:0005515(InterPro)
Sed08g2668 467 Pfam Leucine rich repeat 180 238 IPR001611 GO:0005515(InterPro)
Sed08g2668 467 Pfam Leucine rich repeat 299 358 IPR001611 GO:0005515(InterPro)
Sed08g2668 467 Gene3D Ribonuclease Inhibitor 197 269 IPR032675 -
Sed08g2668 467 SUPERFAMILY L domain-like 91 386 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2668 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1433 Sed-Chr5:27839259 Sed08g2668 Sed-Chr8:38818058 2.10E-07 transposed
Sed01g2236 Sed-Chr1:16832148 Sed08g2668 Sed-Chr8:38818058 6.00E-89 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g245 . . . . . . Bma14g01692 . Cmo04g01616 Cmo18g01074 . Cma18g01052 Car04g01594 Car18g00977 Sed08g2668 Cpe09g00266 Cpe01g01372 Bhi07g01382 Tan04g0911 Cmetu12g0289 Lac13g0447 Hepe10g1861 . . Cla05g02338 Cam05g2512 Cec05g2537 Cco05g2579 Clacu05g2506 Cmu05g2368 Cre05g2485 Cone13ag0865 Cone19ag0865 . . Lsi04g00299 Csa05g02568 Chy10g01107 Cme10g00302 . . Bda07g01522 . Bpe11g01684 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013168 1 0 1 1 1 1 1 1 1 0 1 1 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 27