Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2704 ATGGCAGTGGAAGAATCGATCACAGCTGCATCGGCGGAAGATCTTTCCAATTCCATCGCAAATCAAAACCCTAGGGGACGCGACGCCGAGGAAGATGTGGATCTCGAAGAAGGAGAGATCGTCGGCGGCGACGATGACCTCGATTTTCCGGCGGCGATAATGCACCAGCCTCACCCTCTGGAGCACTCTTGGACCTTCTGGTTCGATAACCCCTCTACTAGATCCAAACAGGCCAATTGGGGTGAGTCTACTCGACCCATCTACACCTTCTCTACTGTTGAGGACTTTTGGAGTGTTTACAACAATATTCATCATCCAAGCAAAATGGCAATGAAGGCTGATTTATATTGCTTTAAACATAATATCGTGCCTAAATGGGAGGATCCTATTTGTGCGACTGGAGGGAAATGGACTATTAACTTTCCAAGGGGAAAATCTGATAATGGCTGGCTGTACACGCTGCTTGCTATGATCGGAGAACAGTTTGATGGTGGTGATGAAATTTGTGGAGCAGTTGTTAATGTTAGATCTGGGCAGGATAAAATATCGATTTGGACAAAAAATGCTTCCAATGAAGCTGCGCAGGTGAGCGTTGGAAAGCAGTGGAAGGAGTTCCTCGATTACAATGACAGCATTGGCTTTATATTCCACGACGATTCAAAGAAATTTGAAAGACATGCGAAGAATAAGTATTTGGTATGA 702 45.3 MAVEESITAASAEDLSNSIANQNPRGRDAEEDVDLEEGEIVGGDDDLDFPAAIMHQPHPLEHSWTFWFDNPSTRSKQANWGESTRPIYTFSTVEDFWSVYNNIHHPSKMAMKADLYCFKHNIVPKWEDPICATGGKWTINFPRGKSDNGWLYTLLAMIGEQFDGGDEICGAVVNVRSGQDKISIWTKNASNEAAQVSVGKQWKEFLDYNDSIGFIFHDDSKKFERHAKNKYLV 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 39011652 39014301 + Sed0014550.1 Sed08g2704 724480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2704 233 ProSitePatterns Eukaryotic initiation factor 4E signature. 114 137 IPR019770 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0006413(InterPro)
Sed08g2704 233 Pfam Eukaryotic initiation factor 4E 59 211 IPR001040 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro)
Sed08g2704 233 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED 23 227 IPR001040 GO:0000340(PANTHER)|GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0006413(InterPro)|GO:0016281(PANTHER)
Sed08g2704 233 MobiDBLite consensus disorder prediction 1 33 - -
Sed08g2704 233 SUPERFAMILY eIF4e-like 53 229 IPR023398 -
Sed08g2704 233 MobiDBLite consensus disorder prediction 10 24 - -
Sed08g2704 233 Gene3D RNA Cap, Translation Initiation Factor Eif4e 50 233 IPR023398 -
Sed08g2704 233 FunFam Eukaryotic translation initiation factor 4E 50 233 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2195 Sed-Chr1:16491400 Sed08g2704 Sed-Chr8:39011652 2.70E-104 dispersed
Sed02g0891 Sed-Chr2:46422383 Sed08g2704 Sed-Chr8:39011652 4.60E-27 dispersed
Sed08g2704 Sed-Chr8:39011652 Sed09g0219 Sed-Chr9:1733584 5.90E-56 dispersed
Sed01g2194 Sed-Chr1:16491400 Sed08g2704 Sed-Chr8:39011652 2.70E-104 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2704 K03259 - csv:101206312 425.631