Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2710 ATGCTGTCAAACAACCATAGCAACAGTCCTACTACTCCTAGAACCAGGTTGGAAAGGCTTCTTAGGGAAAGAGAGCTCAGGAGATCAAACCGGTCTTCTTCTCTTAATGAAGAAGCACGAGATGCTCATAGTGTGGGAGAAATCAACACTAACGATTTCACACTTTTTGGTGATAGTTGTGTGTCACTTAATGAAGAAGAGCTCTTAGAAGGGGGTTCATTGTTAAAAGACCTCATTGATGGATTCCATAGGCCAGAAGGGAAGACTTCCAAGCAACGCCTTCTTGTTGTAGCAAACAGATTACCCGTTTCTGCCGTTCGGAAAGGGAAGGAGACATGGCATCTTGAAATTAGCGTCGGTGGTTTAGTCAGTGCACTTTTAGGGCTAAAAGAGTTCGAGGCACGATGGATTGGTTGGGCTGGTGTGAATGTACCCGATGAAGCCGGACAAAGAGCCTTAGAGAAAGCATTGGCTGAAAAGAAATGCATACCGGTCTTTCTTGATGAGGAGATCGTTCATCAGTATTACAATGGCTACTGTAACAACATCTTGTGGCCTCTGTTTCATTACCTTGGTCTTCCACAAGAAGACCGCCTTGCAACAACTCGAAGTTTTCAGTCACAGTTTGATGCATATAAGAAGGCAAACCAAATGTTTGCTGATGTTGTAAACAAATATTATGAAGAGGGAGATGTTGTTTGGTGTCATGATTATCACTTGATGTTTCTCCCAAAATGTCTTAAAGAGCATAATAATCAGATGAAAGTTGGTTGGTTTCTTCACACCCCATTTCCGTCCTCAGAAATACATAGAACTCTACCATCTCGTTCAGAGCTTCTGAAATCTGTTCTTGCAGCTGATTTAGTTGGTTTCCACACATATGATTATGCCAGGCATTTTGTTAGTGCTTGCACCCGTATTCTTGGATTGGAGGGTACGCCCGAAGGAGTAGAGGATCAAGGAAAACTGACTCGAATAGCAGCTTTTCCTATTGGAATAGATTCTGAACGGTTCATTCGAGCTCTTAAACTCCCTCTAGTCCAGGATCACATTAAGGAGCTTCAAGAAAGATTTGCAGGAAGAAAGGTAATGCTGGGTGTTGATCGTCTTGATATGATTAAGGGAATACCCCAAAAGATTCTGGCATTTGAAAAATTTCTTGAAGAAAATCCAACCTGGCGTGATAAAGTAGTCTTGCTGCAAATTGCTGTGCCAACGAGGACAGATGTTCCCGAATATCAAAAGCTGACGAGTCAAGTTCATGAGATTGTCGGGCGTATCAATGGGAGATTTGGCACCCTTACTGCAGTTCCTATACATCATCTGGATCGTTCACTTGATTTCCATGCATTATGCGCTTTATATGCTGTCACTGATGTGGCACTGGTTACATCTTTAAGAGATGGAATGAATCTTGTGAGCTATGAGTTTGTGGCCTGCCAAGCTTCCAAGAAAGGTGTTCTTATACTAAGCGAGTTCGCAGGTGCAGCACAGTCATTAGGTGCTGGTGCTATTTTAGTTAATCCATGGAATATCACTGAAGTTGCTGCTTCAATTGGTTATGCTTTGAATATGCCAGCTGATGAAAGAGAAAGGCGACACCATCATAACTTCATGCATGTTACGACTCACACATCCCAGGAATGGGCTGCGACATTTGTGAGTGAACTCAACGACACCATAGTCGAAGCTCAGATCAGGACCAGACAAATACCACCTTTACTTCCAATTAAAGAGGCAGTAAACTGTTATTCAAGATCACATAATCGATTGGTTATTCTGGGTTTCAATGCTACCTTAACTGAAGCAATCGATGTCCTTGGAAGAAGATATGGCCAAATTAGAGACATGGATCTTAAAGTACATCCAGATGTGAGAGATTCCTTGAAGAAGCTTTGCGACGATCGGAATACGACAGTGGTCGTCCTTAGTGGGAGTGACAGAAGTGTCCTAGATGAGAACTTCGGCGACTACGACATGTGGTTGGCAGCAGAAAATGGAATGTTCTTGCGTCCTACAAAGGGAGGATGGATGACAACTATGCCCGAAAATTTACATATGGACTGGGTTGAGAGTGTTAAGCATGTTTTCGAGTATTTTACCGAAAGAACTCCTAGATCCCATTTCGAGCTTCGTGAAACTTCGCTGGTGTGGAGTTACAAACACGCAGATGTTGAGTTTGGAAGACTTCAAGCGAGGGACTTGTTGCAGCATCTATGGACTGGTCCAATCTCAAATGCATCTGTTGATGTTGTCCAAGGAAGTCGATCAGTCGAGGTTCGAGCAGTTGGTGTTACAAAGGGTGCTGCCATTGATCGAATATTGGGAGAAATAGTTCGTGACAAAGGCATAAACAAGCCTATTGATTATGTTCTCTGTGTTGGACACTTCCTAACCAAGGATGAAGATGTCTACACATTTTTCGAGCCCGACCTTCCTTCCGAAGTGCCACCTACAGTAAGAACAACAGCTAACAATTCTTTTGGAGTACCAGCGCCAAATATCCCAAACAATGGAGTCCCACCGAAGGCAGCACACCTCAAGAAACAGCGTTCACTTTCCATTTTAGAAAGAAGAGCAAATAGTCATGGCAGTGCAGTCTTTTGGAGGCCTATCGTGCAGGATCGATTGTCGCTGCACGAGGGTTCGTCTGTTCTTGATCTCAAGGGTGACAATTACTTCTCATGTGCGGTTGGACGGAAGCGTTCGAACGCGAGATATCTTCTTGGATCATCAGATGAAGTTGTCACACTTGTTAAGGAGTTGTCAGAATGTTGA 2778 43.41 MLSNNHSNSPTTPRTRLERLLRERELRRSNRSSSLNEEARDAHSVGEINTNDFTLFGDSCVSLNEEELLEGGSLLKDLIDGFHRPEGKTSKQRLLVVANRLPVSAVRKGKETWHLEISVGGLVSALLGLKEFEARWIGWAGVNVPDEAGQRALEKALAEKKCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFDAYKKANQMFADVVNKYYEEGDVVWCHDYHLMFLPKCLKEHNNQMKVGWFLHTPFPSSEIHRTLPSRSELLKSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGKLTRIAAFPIGIDSERFIRALKLPLVQDHIKELQERFAGRKVMLGVDRLDMIKGIPQKILAFEKFLEENPTWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQASKKGVLILSEFAGAAQSLGAGAILVNPWNITEVAASIGYALNMPADERERRHHHNFMHVTTHTSQEWAATFVSELNDTIVEAQIRTRQIPPLLPIKEAVNCYSRSHNRLVILGFNATLTEAIDVLGRRYGQIRDMDLKVHPDVRDSLKKLCDDRNTTVVVLSGSDRSVLDENFGDYDMWLAAENGMFLRPTKGGWMTTMPENLHMDWVESVKHVFEYFTERTPRSHFELRETSLVWSYKHADVEFGRLQARDLLQHLWTGPISNASVDVVQGSRSVEVRAVGVTKGAAIDRILGEIVRDKGINKPIDYVLCVGHFLTKDEDVYTFFEPDLPSEVPPTVRTTANNSFGVPAPNIPNNGVPPKAAHLKKQRSLSILERRANSHGSAVFWRPIVQDRLSLHEGSSVLDLKGDNYFSCAVGRKRSNARYLLGSSDEVVTLVKELSEC 925
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 39028984 39044004 - Sed0015202.1 Sed08g2710 724486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2710 925 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 92 561 - -
Sed08g2710 925 MobiDBLite consensus disorder prediction 16 43 - -
Sed08g2710 925 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 683 763 - -
Sed08g2710 925 MobiDBLite consensus disorder prediction 1 43 - -
Sed08g2710 925 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 340 542 - -
Sed08g2710 925 Gene3D Glycogen Phosphorylase B; 340 542 - -
Sed08g2710 925 CDD HAD_TPP 591 811 - -
Sed08g2710 925 FunFam Alpha,alpha-trehalose-phosphate synthase 617 686 - -
Sed08g2710 925 Pfam Trehalose-phosphatase 616 824 IPR003337 GO:0005992(InterPro)
Sed08g2710 925 CDD GT20_TPS 93 558 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Sed08g2710 925 Gene3D - 683 763 - -
Sed08g2710 925 MobiDBLite consensus disorder prediction 1 15 - -
Sed08g2710 925 Gene3D Glycogen Phosphorylase B; 85 339 - -
Sed08g2710 925 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 85 339 - -
Sed08g2710 925 Gene3D - 617 806 IPR023214 -
Sed08g2710 925 NCBIfam alpha,alpha-trehalose-phosphate synthase (UDP-forming) 93 558 IPR012766 GO:0003825(InterPro)|GO:0005992(InterPro)
Sed08g2710 925 SUPERFAMILY HAD-like 616 920 IPR036412 -
Sed08g2710 925 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 88 923 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER)
Sed08g2710 925 Pfam Glycosyltransferase family 20 93 558 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2495 Sed-Chr4:37975318 Sed08g2710 Sed-Chr8:39028984 0.00E+00 dispersed
Sed04g2496 Sed-Chr4:37982706 Sed08g2710 Sed-Chr8:39028984 0.00E+00 dispersed
Sed08g2710 Sed-Chr8:39028984 Sed14g1527 Sed-Chr14:23539662 2.80E-117 dispersed
Sed08g2710 Sed-Chr8:39028984 Sed08g2711 Sed-Chr8:39028984 0.00E+00 tandem
Sed01g2192 Sed-Chr1:16472301 Sed08g2710 Sed-Chr8:39028984 1.30E-36 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2710 K16055 - csv:101213690 1686.77