Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed08g2711 | ATGCTGTCAAACAACCATAGCAACAGTCCTACTACTCCTAGAACCAGGTTGGAAAGGCTTCTTAGGGAAAGAGAGCTCAGGAGATCAAACCGGTCTTCTTCTCTTAATGAAGAAGCACGAGATGCTCATAGTGTGGGAGAAATCAACACTAACGATTTCACACTTTTTGGTGATAGTTGTGTGTCACTTAATGAAGAAGAGCTCTTAGAAGGGGGTTCATTGTTAAAAGACCTCATTGATGGATTCCATAGGCCAGAAGGGAAGACTTCCAAGCAACGCCTTCTTGTTGTAGCAAACAGATTACCCGTTTCTGCCGTTCGGAAAGGGAAGGAGACATGGCATCTTGAAATTAGCGTCGGTGGTTTAGTCAGTGCACTTTTAGGGCTAAAAGAGTTCGAGGCACGATGGATTGGTTGGGCTGGTGTGAATGTACCCGATGAAGCCGGACAAAGAGCCTTAGAGAAAGCATTGGCTGAAAAGAAATGCATACCGGTCTTTCTTGATGAGGAGATCGTTCATCAGTATTACAATGGCTACTGTAACAACATCTTGTGGCCTCTGTTTCATTACCTTGGTCTTCCACAAGAAGACCGCCTTGCAACAACTCGAAGTTTTCAGTCACAGTTTGATGCATATAAGAAGGCAAACCAAATGTTTGCTGATGTTGTAAACAAATATTATGAAGAGGGAGATGTTGTTTGGTGTCATGATTATCACTTGATGTTTCTCCCAAAATGTCTTAAAGAGCATAATAATCAGATGAAAGTTGGTTGGTTTCTTCACACCCCATTTCCGTCCTCAGAAATACATAGAACTCTACCATCTCGTTCAGAGCTTCTGAAATCTGTTCTTGCAGCTGATTTAGTTGGTTTCCACACATATGATTATGCCAGGCATTTTGTTAGTGCTTGCACCCGTATTCTTGGATTGGAGGGTACGCCCGAAGGAGTAGAGGATCAAGGAAAACTGACTCGAATAGCAGCTTTTCCTATTGGAATAGATTCTGAACGGTTCATTCGAGCTCTTAAACTCCCTCTAGTCCAGGATCACATTAAGGAGCTTCAAGAAAGATTTGCAGGAAGAAAGGTAATGCTGGGTGTTGATCGTCTTGATATGATTAAGGGAATACCCCAAAAGATTCTGGCATTTGAAAAATTTCTTGAAGAAAATCCAACCTGGCGTGATAAAGTAGTCTTGCTGCAAATTGCTGTGCCAACGAGGACAGATGTTCCCGAATATCAAAAGCTGACGAGTCAAGTTCATGAGATTGTCGGGCGTATCAATGGGAGATTTGGCACCCTTACTGCAGTTCCTATACATCATCTGGATCGTTCACTTGATTTCCATGCATTATGCGCTTTATATGCTGTCACTGATGTGGCACTGGTTACATCTTTAAGAGATGGAATGAATCTTGTGAGCTATGAGTTTGTGGCCTGCCAAGCTTCCAAGAAAGGTGTTCTTATACTAAGCGAGTTCGCAGGTGCAGCACAGTCATTAGGTGCTGGTGCTATTTTAGTTAATCCATGGAATATCACTGAAGTTGCTGCTTCAATTGGTTATGCTTTGAATATGCCAGCTGATGAAAGAGAAAGGCGACACCATCATAACTTCATGCATGTTACGACTCACACATCCCAGGAATGGGCTGCGACATTTGTGAGTGAACTCAACGACACCATAGTCGAAGCTCAGATCAGGACCAGACAAATACCACCTTTACTTCCAATTAAAGAGGCAGTAAACTGTTATTCAAGATCACATAATCGATTGGTTATTCTGGGTTTCAATGCTACCTTAACTGAAGCAATCGATGTCCTTGGAAGAAGATATGGCCAAATTAGAGACATGGATCTTAAAGTACATCCAGATGTGAGAGATTCCTTGAAGAAGCTTTGCGACGATCGGAATACGACAGTGGTCGTCCTTAGTGGGAGTGACAGAAGTGTCCTAGATGAGAACTTCGGCGACTACGACATGTGGTTGGCAGCAGAAAATGGAATGTTCTTGCGTCCTACAAAGGGAGGATGGATGACAACTATGCCCGAAAATTTACATATGGACTGGGTTGAGAGTGTTAAGCATGTTTTCGAGTATTTTACCGAAAGAACTCCTAGATCCCATTTCGAGCTTCGTGAAACTTCGCTGGTGTGGAGTTACAAACACGCAGATGTTGAGTTTGGAAGACTTCAAGCGAGGGACTTGTTGCAGCATCTATGGACTGGTCCAATCTCAAATGCATCTGTTGATGTTGTCCAAGGAAGTCGATCAGTCGAGGTTCGAGCAGTTGGTGTTACAAAGGGTGCTGCCATTGATCGAATATTGGGAGAAATAGTTCGTGACAAAGGCATAAACAAGCCTATTGATTATGTTCTCTGTGTTGGACACTTCCTAACCAAGGTATGTACATTCAATTACGTTTCCAACGTCCAACCATCATGGAGTGGCTTAATTGTCAAGAAGGTCTTCAGTAACTAA | 2478 | 42.82 | MLSNNHSNSPTTPRTRLERLLRERELRRSNRSSSLNEEARDAHSVGEINTNDFTLFGDSCVSLNEEELLEGGSLLKDLIDGFHRPEGKTSKQRLLVVANRLPVSAVRKGKETWHLEISVGGLVSALLGLKEFEARWIGWAGVNVPDEAGQRALEKALAEKKCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFDAYKKANQMFADVVNKYYEEGDVVWCHDYHLMFLPKCLKEHNNQMKVGWFLHTPFPSSEIHRTLPSRSELLKSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGKLTRIAAFPIGIDSERFIRALKLPLVQDHIKELQERFAGRKVMLGVDRLDMIKGIPQKILAFEKFLEENPTWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQASKKGVLILSEFAGAAQSLGAGAILVNPWNITEVAASIGYALNMPADERERRHHHNFMHVTTHTSQEWAATFVSELNDTIVEAQIRTRQIPPLLPIKEAVNCYSRSHNRLVILGFNATLTEAIDVLGRRYGQIRDMDLKVHPDVRDSLKKLCDDRNTTVVVLSGSDRSVLDENFGDYDMWLAAENGMFLRPTKGGWMTTMPENLHMDWVESVKHVFEYFTERTPRSHFELRETSLVWSYKHADVEFGRLQARDLLQHLWTGPISNASVDVVQGSRSVEVRAVGVTKGAAIDRILGEIVRDKGINKPIDYVLCVGHFLTKVCTFNYVSNVQPSWSGLIVKKVFSN | 825 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 39028984 | 39044004 | - | Sed0015202.2 | Sed08g2711 | 724487 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed08g2711 | 825 | Gene3D | - | 683 | 763 | - | - | |
Sed08g2711 | 825 | PANTHER | TREHALOSE-6-PHOSPHATE SYNTHASE | 88 | 805 | IPR001830 | GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER) | |
Sed08g2711 | 825 | FunFam | alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like | 340 | 542 | - | - | |
Sed08g2711 | 825 | FunFam | Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 | 683 | 763 | - | - | |
Sed08g2711 | 825 | Gene3D | Glycogen Phosphorylase B; | 340 | 542 | - | - | |
Sed08g2711 | 825 | MobiDBLite | consensus disorder prediction | 16 | 43 | - | - | |
Sed08g2711 | 825 | MobiDBLite | consensus disorder prediction | 1 | 43 | - | - | |
Sed08g2711 | 825 | Gene3D | - | 617 | 777 | IPR023214 | - | |
Sed08g2711 | 825 | SUPERFAMILY | UDP-Glycosyltransferase/glycogen phosphorylase | 92 | 561 | - | - | |
Sed08g2711 | 825 | FunFam | alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 | 85 | 339 | - | - | |
Sed08g2711 | 825 | Pfam | Glycosyltransferase family 20 | 93 | 558 | IPR001830 | GO:0003824(InterPro)|GO:0005992(InterPro) | |
Sed08g2711 | 825 | Gene3D | Glycogen Phosphorylase B; | 85 | 339 | - | - | |
Sed08g2711 | 825 | CDD | GT20_TPS | 93 | 558 | IPR001830 | GO:0003824(InterPro)|GO:0005992(InterPro) | |
Sed08g2711 | 825 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
Sed08g2711 | 825 | Pfam | Trehalose-phosphatase | 616 | 810 | IPR003337 | GO:0005992(InterPro) | |
Sed08g2711 | 825 | NCBIfam | alpha,alpha-trehalose-phosphate synthase (UDP-forming) | 93 | 558 | IPR012766 | GO:0003825(InterPro)|GO:0005992(InterPro) | |
Sed08g2711 | 825 | FunFam | Alpha,alpha-trehalose-phosphate synthase | 617 | 686 | - | - | |
Sed08g2711 | 825 | SUPERFAMILY | HAD-like | 616 | 779 | IPR036412 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g2192 | Sed-Chr1:16472301 | Sed08g2711 | Sed-Chr8:39028984 | 1.30E-36 | dispersed | |
Sed08g2711 | Sed-Chr8:39028984 | Sed14g1527 | Sed-Chr14:23539662 | 3.30E-117 | dispersed | |
Sed08g2710 | Sed-Chr8:39028984 | Sed08g2711 | Sed-Chr8:39028984 | 0.00E+00 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed08g2711 | K16055 | - | csv:101213690 | 1484.93 |