Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2714 ATGGAGACTAGCAACGGGGTGAGGTTTCTGTTGGGGAAGCAGTCGTCGATGGCGCCGGAGCGGACGGCGGAGGACGCGGCGGAGGATGCGGCGGAGATCGATCCGGGGCTGAGATTGATGTACTCGGCGAATGAAGGGGATTTGGAAGGGATTAAGGAGCTGATAGAATGTGGAATTGATGTTAACTTTCACGACGTTGATAATCGGACGGCGCTGCATATTGCTGCTTGTCAAGGCTACTCCGACATCGTCGATTTGTTGCTCCGACGAGGCGCTGCCATTGACGCCAAAGATCGCTGGGGTAGTACGCCTCTTGCAGATGCTATATTCTACAAAAACACTGAAGTTATCAAGTTGTTGGAAAAAAGTGGTGCAAAACATCTGAAAGCTCCCATGCTCGTCGCGCATGCTCGTGAAGTCCCAGAATATGAAATCGATCCTAAAGAGTTTGACTTCACAAACAGTGTCGACTTAACCAAGGGAACCTTCCATCTAGGATCATGGCGTGGAATCCAAGTTGCAGTGAAAGAGCTTCACGAGGATGTGATTTCTGTGGAGGATAAAGTGAACGCCTTTCGAAACGAGCTTGCGTTGCTTCAGAAGATTCGGCATCCTAACGTTGTTCAATTTCTTGGTGCTGTCACTCAAAGTAGTCCCATGATGATTGTTACTGAATATTTGCCAAAGGGAGATCTTTGTCAATTTTTACATAAAAAGGGACCATTGAAACCAATTGTAGCTGTGAGATTTGCCCTTGATATTGCAAGGGGAATGAACTATTTGCACGAAAACAAGCCCGCACCAATCATCCATCGTGATCTCGAGCCATCAAATATATTGCGAGATGACACTGGGAACCTGAAAGTTGCAGACTTTGGAGTTAGCAAGTTGCTCACAGTCAAGGATGACAAGCCTCTAACATGTCAAGACACTGCTTGCCGATATGTCGCTCCCGAAGTTTTCAAAAACAAAGGATACGATACTAAAGTGGATGTCTTTTCGTTTGCTTTAATTCTACAAGAGATGATCGAAGGGCAACCGCCATTTTCGAACAAGAAAGAAAATGTCATTCTTAAAGAGTATGCAAACGGTGTACGCCCGGCTTTCAAAGCTCCAGCTAAATGCTACGCTCATGGAATCAAAGAGTTGATCGAAGATTGTTGGAATGAGAGACCATCAAAGAGACCAACATTTAGACAGATAATCACAAGGCTGGAAACCATTCATCACAGTCTTAGCCATAGAAGGCGATGGAAGCTCCCAACGATGAGATGCTTTCAGAACGACGAGGCCAAGATAAAAAGAAATCATCTGTCGAGCAGCCGGACCCTGTCATCACGATCTGCTAGCAGCATATGA 1359 45.99 METSNGVRFLLGKQSSMAPERTAEDAAEDAAEIDPGLRLMYSANEGDLEGIKELIECGIDVNFHDVDNRTALHIAACQGYSDIVDLLLRRGAAIDAKDRWGSTPLADAIFYKNTEVIKLLEKSGAKHLKAPMLVAHAREVPEYEIDPKEFDFTNSVDLTKGTFHLGSWRGIQVAVKELHEDVISVEDKVNAFRNELALLQKIRHPNVVQFLGAVTQSSPMMIVTEYLPKGDLCQFLHKKGPLKPIVAVRFALDIARGMNYLHENKPAPIIHRDLEPSNILRDDTGNLKVADFGVSKLLTVKDDKPLTCQDTACRYVAPEVFKNKGYDTKVDVFSFALILQEMIEGQPPFSNKKENVILKEYANGVRPAFKAPAKCYAHGIKELIEDCWNERPSKRPTFRQIITRLETIHHSLSHRRRWKLPTMRCFQNDEAKIKRNHLSSSRTLSSRSASSI 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 39061769 39066779 - Sed0009859.1 Sed08g2714 724490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2714 452 Coils Coil 175 195 - -
Sed08g2714 452 ProSiteProfiles Protein kinase domain profile. 117 412 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g2714 452 SUPERFAMILY Ankyrin repeat 38 127 IPR036770 -
Sed08g2714 452 Gene3D - 11 143 IPR036770 -
Sed08g2714 452 ProSiteProfiles Ankyrin repeat profile. 67 99 IPR002110 GO:0005515(InterPro)
Sed08g2714 452 FunFam Integrin-linked protein kinase family 19 143 - -
Sed08g2714 452 FunFam Integrin-linked protein kinase family 228 421 - -
Sed08g2714 452 SMART ANK_2a 67 96 IPR002110 GO:0005515(InterPro)
Sed08g2714 452 SMART ANK_2a 34 63 IPR002110 GO:0005515(InterPro)
Sed08g2714 452 SMART ANK_2a 100 129 IPR002110 GO:0005515(InterPro)
Sed08g2714 452 Gene3D Phosphorylase Kinase; domain 1 148 227 - -
Sed08g2714 452 FunFam serine/threonine-protein kinase STY46-like 145 228 - -
Sed08g2714 452 Gene3D Transferase(Phosphotransferase) domain 1 228 450 - -
Sed08g2714 452 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 70 406 IPR051681 GO:0004674(PANTHER)
Sed08g2714 452 SUPERFAMILY Protein kinase-like (PK-like) 164 431 IPR011009 -
Sed08g2714 452 PIRSF ILK 2 427 - -
Sed08g2714 452 CDD STKc_MAP3K-like 161 405 - -
Sed08g2714 452 ProSiteProfiles Ankyrin repeat region circular profile. 67 99 - -
Sed08g2714 452 Pfam Ankyrin repeats (3 copies) 39 126 IPR002110 GO:0005515(InterPro)
Sed08g2714 452 Pfam Protein tyrosine and serine/threonine kinase 165 405 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0721 Sed-Chr1:5294382 Sed08g2714 Sed-Chr8:39061769 7.80E-137 dispersed
Sed01g2187 Sed-Chr1:16457389 Sed08g2714 Sed-Chr8:39061769 1.50E-180 dispersed
Sed01g2189 Sed-Chr1:16457389 Sed08g2714 Sed-Chr8:39061769 7.60E-121 dispersed
Sed01g2190 Sed-Chr1:16457389 Sed08g2714 Sed-Chr8:39061769 7.60E-121 dispersed
Sed06g1505 Sed-Chr6:39732390 Sed08g2714 Sed-Chr8:39061769 3.60E-83 dispersed
Sed07g1958 Sed-Chr7:34163521 Sed08g2714 Sed-Chr8:39061769 1.90E-81 dispersed
Sed08g2714 Sed-Chr8:39061769 Sed10g1804 Sed-Chr10:35069399 4.00E-85 dispersed
Sed01g2182 Sed-Chr1:16457389 Sed08g2714 Sed-Chr8:39061769 1.20E-193 wgd
Sed14g1542 Sed-Chr14:23620914 Sed08g2714 Sed-Chr8:39061769 2.10E-106 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79718 PF07714 PK_Tyr_Ser-Thr 2.00E-56 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2714 - - - 0.0