Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2717 ATGGCGGCCAAGAGCTTCTTCGTTTTCACTGTTCTTCTTGTGGTGGATTTCTTCATGTTCTTCAGATTTGCAGATTCCAAGCTTCCCCAAGAAGAGGTTGATGCACTACATCAAATTACAAGAACATTAGGTGCAATTTATTGGAAATTCAATAGTGACTCCTGTGCTGTTGAAATGTTTGGGGTCACAGAAAAACCGCCGAGGGGATCTGTGAGTGAAATTGGCTGTGAATGCAACCTCAAGAACAGCACAACTTGTCATGTCGTAAAGATAGAATTCAAAATTCACAATCTGCCCGGAGTTCTTCCACCTGAAATTGTAAAGCTTCCTTACCTGAAAGAAATTGATCTTGCTTACAACTACCTTCGTGGTAACATACCTCGGGAGTGGGCTTCGATGCGGCTGACAACAATCTCTCTTCTTGTAAATCGTTTATCGGGGACAATACCAGCGGAATTGGGGAATATTACTACTCTCACATTCCTGAACCTTGAAGCCAACCAATTTATTGGTGCAATTCCATCAGAACTTGGGAGGTTGAGATATCTGCAAACCTTGATGCTATCATCTAATCGATTGACTGGCCAATTGCCAGCATCGTTTGCAGGACTGGAAAACCTAACGAACTTCCGAATAAATGATAACAACCTCAATGGAACCATACCTGAATTCATACAGAATTGGAAACTACTCCAAAGATTAGAACTGCATGCAAGTGGACTTCAGGGACCAATTCCTGCAAAAATCTCCCTTTTGAGTAAAATGACCGAGTTGAGGATCAGTGATATTCATGGGCCAAAGCAGGGGTTTCCTGAGTTGTCAAACATGACAGGCATAGTTAGATTAGTACTGAGAAATTGCAACATTGCTGGAAAAGTTCCTTCATATTTGTGGACCATACCAACTATGGAAATGCTGGACCTTAGCTTTAACCAGTTGACTGGGGAACTTCCAGCGGAGATTAACTTGGAACGAATTAAATATCTCTTCTTAAGTGGCAATATGCTGAGTGGCAACCTACCAGAGTCAATTTTGAAGGATGGAAGTAGTGTTGATCTTTCATACAATAACTTGACATGGAAAGGCCCTGAGGAGTATGGTTGTAGAAAAAATTTGAATTTGAATCTAAACTTGTTTCGAAGTTCTTCCACTGGCGGCACCTCATTTTCTTTTGTGCTGATATCTGATGTATCTTCTCTGTTGACTTGCTCATGTCATAGCAGACAAAAAAGTCTCCCCTGCTTGAACGATCTCATCTGTTTAAAATATTCAAAATGTTGGTTCATCAATTCCGGTGGGAATGACTTAGCCTTGGAGGTAGACAATAAAAGCATTCTCTACACTGGAGATTTAGTTGAAGGTGGGACAGCAAAGTTCTATGTTGATCATGATAGCTATTGGGGATTGAGTAGTACTGGAGATTTCATGGACGACAATGATCACCAAAATACACGTTACACTTTATCCTTGCCTACATCAAATTTATCCGGGTTATATTCATCAGCACGACGTACTCCGATTTCACTCACATATTTCCATCATTGCTTGGATAATGGAAACTACTCAGTGAAGCTTCATTTTGCAGAATTACAATTTACAGATGAAAAGACATTTAGTAGTCTTGGAAGAAGGAAATTTGATATCTACATTCAGGATAAATTGGTATGGGAGAATTTTGATATTGAAGAGAGGGCAGGAGGAGTTCAAAAACCGATCGACGAGCAGTTTTCTAACATTAGTGTAATTAATCATGTCCTGGAGATCCGATTCTATTGGGCTGGGAAAGGGACAACTAGGATTCCTGTTAGCGGAGTCTATGGTCCACTTATATCAGCTATTTCTGTTTATTCTGATCTTAAATATTGTTCAAACCGTGAAAGTAGTAAAAAGGAAAGTGTAGCTATCATTGTTGGAGTTTCGGTTGGATTATTATGCCTTGCTGCTACAATCATCATAGTGGGACTTTTTTGGTGGAAAGGTACCCTTAGAGCATTGAGGCGGAGTAAAGATGGTTCAGATCTTTCAGGAATAGAGGTGCAAACTGGAATTTTTACCTTGAGGAAGATAAAAGCTGCCACTAATCATTTTGATTCTTCTAATAAAATTGGAGAAGGTGGTTTTGGCCCTGTTTATAAGGGTCAATTGGCTGATGGTACTTTTGTAGCAATTAAGCAGCTCTCATCCAAATCGAAGCAGGGAAATCGCGAATTTCTGAATGAGATTGGAACAATCTCATGTTTGCAACACCCAAATCTAGTCAAGCTCCATGGTTGTTGTATTGAAGGGGATCAATTGTTATTGGTGTATGAGTATTTGGAAAACAATAGTCTTGCCCGAGCACTATTTGGTCCAGATCATCGTCGTCTTAATCTAGATTGGCCAACCAGGCTTAGAATATGTATCGGCATAGCAAAAGGCTTAGCATATCTCCACGAGGAATCTAGCCTCAAAATTGTTCACAGAGACATCAAAGCTACTAATGTGCTTCTAGATGGCAACTTGAATCCTAAAATATCTGATTTTGGATTGGCTAAGCTTGATGATGAGGAGAAGACTCACATCACAACAAGAGTGGCCGGGACTATAGGATATATGGCTCCAGAATATGCACTTTGGGGTTATCTATCCTACAAAGCAGATGTGTATAGTTTTGGAGTTGTAGCTTTGGAAATTATCAGTGGAAGAAGCAACAATGATTATGTACCAAGTGAAACTTGTGTTTGCCTTCTAGACTGGGCCTGTCACTTGCAAAATTCTGGGAAACTGAGGGAGCTGGTTGATGCAAATTTGTGGTCAGAGATAGACTGGAATGAAGCGGAAAACATGGCAAAAATTGCCCTTATCTGCACAAGCGCTTTGCCATCAGTACGGCCTGCAATGTCCGAAGTGGTGAACATGCTTGAAGGACGAATGGCCATTCCAGACCCGAACCCGGAACCGGGTACTTACAATGATGACCTGAGGTTCAAGGCGATGAGAGATATGCGAAAAAAGCAACAGGACCAAAGCCAGACACAAAGTTCCACAATGCAAACATATGAGTCTTCCTCTGCATCTGGATATGAGTTCTATACATTATCAACTCAGAGCCAAAATCATGATCAATAA 3108 40.67 MAAKSFFVFTVLLVVDFFMFFRFADSKLPQEEVDALHQITRTLGAIYWKFNSDSCAVEMFGVTEKPPRGSVSEIGCECNLKNSTTCHVVKIEFKIHNLPGVLPPEIVKLPYLKEIDLAYNYLRGNIPREWASMRLTTISLLVNRLSGTIPAELGNITTLTFLNLEANQFIGAIPSELGRLRYLQTLMLSSNRLTGQLPASFAGLENLTNFRINDNNLNGTIPEFIQNWKLLQRLELHASGLQGPIPAKISLLSKMTELRISDIHGPKQGFPELSNMTGIVRLVLRNCNIAGKVPSYLWTIPTMEMLDLSFNQLTGELPAEINLERIKYLFLSGNMLSGNLPESILKDGSSVDLSYNNLTWKGPEEYGCRKNLNLNLNLFRSSSTGGTSFSFVLISDVSSLLTCSCHSRQKSLPCLNDLICLKYSKCWFINSGGNDLALEVDNKSILYTGDLVEGGTAKFYVDHDSYWGLSSTGDFMDDNDHQNTRYTLSLPTSNLSGLYSSARRTPISLTYFHHCLDNGNYSVKLHFAELQFTDEKTFSSLGRRKFDIYIQDKLVWENFDIEERAGGVQKPIDEQFSNISVINHVLEIRFYWAGKGTTRIPVSGVYGPLISAISVYSDLKYCSNRESSKKESVAIIVGVSVGLLCLAATIIIVGLFWWKGTLRALRRSKDGSDLSGIEVQTGIFTLRKIKAATNHFDSSNKIGEGGFGPVYKGQLADGTFVAIKQLSSKSKQGNREFLNEIGTISCLQHPNLVKLHGCCIEGDQLLLVYEYLENNSLARALFGPDHRRLNLDWPTRLRICIGIAKGLAYLHEESSLKIVHRDIKATNVLLDGNLNPKISDFGLAKLDDEEKTHITTRVAGTIGYMAPEYALWGYLSYKADVYSFGVVALEIISGRSNNDYVPSETCVCLLDWACHLQNSGKLRELVDANLWSEIDWNEAENMAKIALICTSALPSVRPAMSEVVNMLEGRMAIPDPNPEPGTYNDDLRFKAMRDMRKKQQDQSQTQSSTMQTYESSSASGYEFYTLSTQSQNHDQ 1035
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 39075901 39088998 - Sed0008044.2 Sed08g2717 724493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2717 1035 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 18 993 IPR051824 -
Sed08g2717 1035 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 34 197 - -
Sed08g2717 1035 SUPERFAMILY Protein kinase-like (PK-like) 673 969 IPR011009 -
Sed08g2717 1035 MobiDBLite consensus disorder prediction 992 1017 - -
Sed08g2717 1035 FunFam Putative LRR receptor-like serine/threonine-protein kinase 772 978 - -
Sed08g2717 1035 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 424 618 - -
Sed08g2717 1035 SUPERFAMILY L domain-like 86 359 - -
Sed08g2717 1035 Gene3D Transferase(Phosphotransferase) domain 1 772 974 - -
Sed08g2717 1035 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 266 387 - -
Sed08g2717 1035 ProSiteProfiles Protein kinase domain profile. 696 973 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g2717 1035 Pfam Leucine Rich Repeat 183 204 IPR001611 GO:0005515(InterPro)
Sed08g2717 1035 Pfam Leucine Rich Repeat 206 228 IPR001611 GO:0005515(InterPro)
Sed08g2717 1035 Pfam Leucine Rich Repeat 326 344 IPR001611 GO:0005515(InterPro)
Sed08g2717 1035 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 665 771 - -
Sed08g2717 1035 MobiDBLite consensus disorder prediction 1001 1017 - -
Sed08g2717 1035 Pfam Protein tyrosine and serine/threonine kinase 699 967 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g2717 1035 CDD STKc_IRAK 702 969 - -
Sed08g2717 1035 Gene3D Ribonuclease Inhibitor 268 385 IPR032675 -
Sed08g2717 1035 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 198 264 - -
Sed08g2717 1035 SMART serkin_6 696 967 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g2717 1035 Gene3D Phosphorylase Kinase; domain 1 660 771 - -
Sed08g2717 1035 Gene3D - 424 619 - -
Sed08g2717 1035 Gene3D Ribonuclease Inhibitor 197 267 IPR032675 -
Sed08g2717 1035 Gene3D Ribonuclease Inhibitor 34 196 IPR032675 -
Sed08g2717 1035 Pfam Malectin domain 426 613 IPR021720 -
Sed08g2717 1035 ProSitePatterns Serine/Threonine protein kinases active-site signature. 818 830 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2717 Sed-Chr8:39075901 Sed08g2719 Sed-Chr8:39075901 0.00E+00 dispersed
Sed08g2716 Sed-Chr8:39075901 Sed08g2717 Sed-Chr8:39075901 0.00E+00 tandem
Sed08g2717 Sed-Chr8:39075901 Sed08g2718 Sed-Chr8:39075901 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79720 PF07714 PK_Tyr_Ser-Thr 3.90E-46 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2717 - - - 0.0