Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2720 ATGGCGGCCAAGAGCTTCTTCGTTTTCACTGTTCTTCTTGTGGTGGATTTCTTCATGTTCTTCAGATTTGCAGATTCCAAGCTTCCCCAAGAAGAGGTTGATGCACTACATCAAATTACAAGAACATTAGGTGCAATTTATTGGAAATTCAATAGTGACTCCTGTGCTGTTGAAATGTTTGGGGTCACAGAAAAACCGCCGAGGGGATCTGTGAGTGAAATTGGCTGTGAATGCAACCTCAAGAACAGCACAACTTGTCATGTCGTAAAGATAGAATTCAAAATTCACAATCTGCCCGGAGTTCTTCCACCTGAAATTGTAAAGCTTCCTTACCTGAAAGAAATTGATCTTGCTTACAACTACCTTCGTGGTAACATACCTCGGGAGTGGGCTTCGATGCGGCTGACAACAATCTCTCTTCTTGTAAATCGTTTATCGGGGACAATACCAGCGGAATTGGGGAATATTACTACTCTCACATTCCTGAACCTTGAAGCCAACCAATTTATTGGTGCAATTCCATCAGAACTTGGGAGGTTGAGATATCTGCAAACCTTGATGCTATCATCTAATCGATTGACTGGCCAATTGCCAGCATCGTTTGCAGGACTGGAAAACCTAACGAACTTCCGAATAAATGATAACAACCTCAATGGAACCATACCTGAATTCATACAGAATTGGAAACTACTCCAAAGATTAGAACTGCATGCAAGTGGACTTCAGGGACCAATTCCTGCAAAAATCTCCCTTTTGAGTAAAATGACCGAGTTGAGGATCAGTGATATTCATGGGCCAAAGCAGGGGTTTCCTGAGTTGTCAAACATGACAGGCATAGTTAGATTAGTACTGAGAAATTGCAACATTGCTGGAAAAGTTCCTTCATATTTGTGGACCATACCAACTATGGAAATGCTGGACCTTAGCTTTAACCAGTTGACTGGGGAACTTCCAGCGGAGATTAACTTGGAACGAATTAAATATCTCTTCTTAAGTGGCAATATGCTGAGTGGCAACCTACCAGAGTCAATTTTGAAGGATGGAAGTAGTGTTGATCTTTCATACAATAACTTGACATGGAAAGGCCCTGAGGAGTATGGTTGTAGAAAAAATTTGAATTTGAATCTAAACTTGTTTCGAAGTTCTTCCACTGGCGGCACCTCACAAAAAAGTCTCCCCTGCTTGAACGATCTCATCTGTTTAAAATATTCAAAATGTTGGTTCATCAATTCCGGTGGGAATGACTTAGCCTTGGAGGTAGACAATAAAAGCATTCTCTACACTGGAGATTTAGTTGAAGGTGGGACAGCAAAGTTCTATGTTGATCATGATAGCTATTGGGGATTGAGTAGTACTGGAGATTTCATGGACGACAATGATCACCAAAATACACGTTACACTTTATCCTTGCCTACATCAAATTTATCCGGGTTATATTCATCAGCACGACGTACTCCGATTTCACTCACATATTTCCATCATTGCTTGGATAATGGAAACTACTCAGTGAAGCTTCATTTTGCAGAATTACAATTTACAGATGAAAAGACATTTAGTAGTCTTGGAAGAAGGAAATTTGATATCTACATTCAGGATAAATTGGTATGGGAGAATTTTGATATTGAAGAGAGGGCAGGAGGAGTTCAAAAACCGATCGACGAGCAGTTTTCTAACATTAGTGTAATTAATCATGTCCTGGAGATCCGATTCTATTGGGCTGGGAAAGGGACAACTAGGATTCCTGTTAGCGGAGTCTATGGTCCACTTATATCAGCTATTTCTGTTTATTCTGATCTTAAATATTGTTCAAACCGTGAAAGTAGTAAAAAGGAAAGTGTAGCTATCATTGTTGGAGTTTCGGTTGGATTATTATGCCTTGCTGCTACAATCATCATAGTGGGACTTTTTTGGTGGAAAGGTACCCTTAGAGCATTGAGGCGGAGTAAAGATGGTTCAGATCTTTCAGGAATAGAGGTGCAAACTGGAATTTTTACCTTGAGGAAGATAAAAGCTGCCACTAATCATTTTGATTCTTCTAATAAAATTGGAGAAGGTGGTTTTGGCCCTGTTTATAAGGGTCAATTGGCTGATGGTACTTTTGTAGCAATTAAGCAGCTCTCATCCAAATCGAAGCAGGGAAATCGCGAATTTCTGAATGAGATTGGAACAATCTCATGTTTGCAACACCCAAATCTAGTCAAGCTCCATGGTTGTTGTATTGAAGGGGATCAATTGTTATTGGTGTATGAGTATTTGGAAAACAATAGTCTTGCCCGAGCACTATTTGGTCCAGATCATCGTCGTCTTAATCTAGATTGGCCAACCAGGCTTAGAATATGTATCGGCATAGCAAAAGGCTTAGCATATCTCCACGAGGAATCTAGCCTCAAAATTGTTCACAGAGACATCAAAGCTACTAATGTGCTTCTAGATGGCAACTTGAATCCTAAAATATCTGATTTTGGATTGGCTAAGCTTGATGATGAGGAGAAGACTCACATCACAACAAGAGTGGCCGGGACTATAGGATATATGGCTCCAGAATATGCACTTTGGGGTTATCTATCCTACAAAGCAGATGTGTATAGTTTTGGAGTTGTAGCTTTGGAAATTATCAGTGGAAGAAGCAACAATGATTATGTACCAAGTGAAACTTGTGTTTGCCTTCTAGACTGGGTAATTCACTCCTCCAGCTGTCACTTTTCTTTTCTGGTCTTACATTAA 2724 40.05 MAAKSFFVFTVLLVVDFFMFFRFADSKLPQEEVDALHQITRTLGAIYWKFNSDSCAVEMFGVTEKPPRGSVSEIGCECNLKNSTTCHVVKIEFKIHNLPGVLPPEIVKLPYLKEIDLAYNYLRGNIPREWASMRLTTISLLVNRLSGTIPAELGNITTLTFLNLEANQFIGAIPSELGRLRYLQTLMLSSNRLTGQLPASFAGLENLTNFRINDNNLNGTIPEFIQNWKLLQRLELHASGLQGPIPAKISLLSKMTELRISDIHGPKQGFPELSNMTGIVRLVLRNCNIAGKVPSYLWTIPTMEMLDLSFNQLTGELPAEINLERIKYLFLSGNMLSGNLPESILKDGSSVDLSYNNLTWKGPEEYGCRKNLNLNLNLFRSSSTGGTSQKSLPCLNDLICLKYSKCWFINSGGNDLALEVDNKSILYTGDLVEGGTAKFYVDHDSYWGLSSTGDFMDDNDHQNTRYTLSLPTSNLSGLYSSARRTPISLTYFHHCLDNGNYSVKLHFAELQFTDEKTFSSLGRRKFDIYIQDKLVWENFDIEERAGGVQKPIDEQFSNISVINHVLEIRFYWAGKGTTRIPVSGVYGPLISAISVYSDLKYCSNRESSKKESVAIIVGVSVGLLCLAATIIIVGLFWWKGTLRALRRSKDGSDLSGIEVQTGIFTLRKIKAATNHFDSSNKIGEGGFGPVYKGQLADGTFVAIKQLSSKSKQGNREFLNEIGTISCLQHPNLVKLHGCCIEGDQLLLVYEYLENNSLARALFGPDHRRLNLDWPTRLRICIGIAKGLAYLHEESSLKIVHRDIKATNVLLDGNLNPKISDFGLAKLDDEEKTHITTRVAGTIGYMAPEYALWGYLSYKADVYSFGVVALEIISGRSNNDYVPSETCVCLLDWVIHSSSCHFSFLVLH 907
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 39076476 39088998 - Sed0008044.4 Sed08g2720 724496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2720 907 FunFam Lectin-domain containing receptor kinase A4.3 752 900 - -
Sed08g2720 907 Gene3D Ribonuclease Inhibitor 192 266 IPR032675 -
Sed08g2720 907 Pfam Leucine Rich Repeat 206 228 IPR001611 GO:0005515(InterPro)
Sed08g2720 907 Pfam Leucine Rich Repeat 326 344 IPR001611 GO:0005515(InterPro)
Sed08g2720 907 Pfam Leucine Rich Repeat 183 204 IPR001611 GO:0005515(InterPro)
Sed08g2720 907 Pfam Leucine Rich Repeat 304 321 IPR001611 GO:0005515(InterPro)
Sed08g2720 907 SUPERFAMILY L domain-like 84 319 - -
Sed08g2720 907 ProSitePatterns Serine/Threonine protein kinases active-site signature. 798 810 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g2720 907 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 645 751 - -
Sed08g2720 907 Pfam Malectin domain 406 593 IPR021720 -
Sed08g2720 907 Gene3D - 404 599 - -
Sed08g2720 907 SUPERFAMILY Protein kinase-like (PK-like) 653 883 IPR011009 -
Sed08g2720 907 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 266 387 - -
Sed08g2720 907 Gene3D Transferase(Phosphotransferase) domain 1 752 900 - -
Sed08g2720 907 Gene3D Ribonuclease Inhibitor 30 191 IPR032675 -
Sed08g2720 907 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 34 197 - -
Sed08g2720 907 Gene3D Ribonuclease Inhibitor 267 385 IPR032675 -
Sed08g2720 907 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 198 264 - -
Sed08g2720 907 Pfam Protein tyrosine and serine/threonine kinase 679 876 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g2720 907 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 18 893 IPR051824 -
Sed08g2720 907 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 404 598 - -
Sed08g2720 907 Gene3D Phosphorylase Kinase; domain 1 640 751 - -
Sed08g2720 907 SMART serkin_6 676 903 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g2720 907 ProSiteProfiles Protein kinase domain profile. 676 907 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2718 Sed-Chr8:39075901 Sed08g2720 Sed-Chr8:39076476 0.00E+00 dispersed
Sed08g2720 Sed-Chr8:39076476 Sed13g0631 Sed-Chr13:4306822 1.50E-163 dispersed
Sed08g2719 Sed-Chr8:39075901 Sed08g2720 Sed-Chr8:39076476 0.00E+00 tandem
Sed08g2720 Sed-Chr8:39076476 Sed08g2721 Sed-Chr8:39076476 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79723 PF07714 PK_Tyr_Ser-Thr 1.20E-44 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2720 - - - 0.0