Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2730 ATGTCATCGGCGACCAGAATGCCGACATGGAAGGAGAGGGAGAACAACAAGCGCCGTGAGAGGCGCCGCCGTGCCATCGCCGCCAAGATCTTCCTCGGATTGCGAATGTACGGCAACTACAAGCTCCCCAAGCACTGCGACAACAACGAGGTCCTCAAAGCCCTCTGCAACGAAGCTGGATGGACTGTCCACGATGACGGCACTACCTACCGGAAGGGATGCAAGCCTGTGGAATGCGATATCATGGGCCGATCAGCTTCTGCAAGTCCGTGTTCATCTTATCAGCCGAGCCCATGTGCCTCTTATAACCCAAGTCCTGTGTCTTCTTCATTACAAAGCCCGATCTCTTCTCATTACACCATTAAAGGCAATGGCAATGGCAATGCTGCTGATCCCAATTCCCTTATCCCATGGCTGAAGAATCTTTCCTCAGGTTCATCATCAGCCTCCTCCAGGCTGCTGCCTTACGATAATCTTTACATTCCTGGTGGCTCCATAAGTGCACCTGTCACCCCTCCGTCGAGCTCCCCAACCGCTCGAACACCCAGAAAACCAAATGATTGGGACAATCATCCCGCAGTTGCTCCTGCTTGGGCTGCACAGCGATTCCCATGCTTGCCTGCATCTGCATCAACCCCACCAAGCCCTGGGCGCCCGCTGTTGGCTGATTCAGCATGGCTCGACAGTATGCGGATTCCTCAAAGTGGACCATCGTCTCCAACCTTCAGCCTTGTGGCAAGGAATCCGTTTGGTTTTATGGAGGCAATGTCCACGGGAGGGTCTCGTAATTGGACTCCTTCACAGAGTGGGGCATGCTCACCCACAGCCGCTGCAGGCACTGATCATACTTCAGATGTTGCAATGACGGATGGAGCCGTGTCGGAGTTTGCTTTCGGAAGTTGTTCGATTGGGTTGGTGAAGGCTTGGGAAGGAGAGAGAATTCAGGAATGCGTCTCTGATGATCTTGAACTTACACTTGGGAATTCAAGGACAAGGTAA 999 53.15 MSSATRMPTWKERENNKRRERRRRAIAAKIFLGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVHDDGTTYRKGCKPVECDIMGRSASASPCSSYQPSPCASYNPSPVSSSLQSPISSHYTIKGNGNGNAADPNSLIPWLKNLSSGSSSASSRLLPYDNLYIPGGSISAPVTPPSSSPTARTPRKPNDWDNHPAVAPAWAAQRFPCLPASASTPPSPGRPLLADSAWLDSMRIPQSGPSSPTFSLVARNPFGFMEAMSTGGSRNWTPSQSGACSPTAAAGTDHTSDVAMTDGAVSEFAFGSCSIGLVKAWEGERIQECVSDDLELTLGNSRTR 332
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 39108351 39111952 - Sed0024926.1 Sed08g2730 724506
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2730 332 MobiDBLite consensus disorder prediction 1 21 - -
Sed08g2730 332 Pfam BES1/BZR1 plant transcription factor, N-terminal 4 143 IPR008540 -
Sed08g2730 332 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 1 332 IPR033264 GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0009742(InterPro)
Sed08g2730 332 MobiDBLite consensus disorder prediction 258 278 - -
Sed08g2730 332 MobiDBLite consensus disorder prediction 166 192 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2177 Sed-Chr1:16420213 Sed08g2730 Sed-Chr8:39108351 2.10E-144 dispersed
Sed01g2178 Sed-Chr1:16420213 Sed08g2730 Sed-Chr8:39108351 9.50E-97 dispersed
Sed04g1537 Sed-Chr4:30179520 Sed08g2730 Sed-Chr8:39108351 1.20E-112 dispersed
Sed08g2730 Sed-Chr8:39108351 Sed13g0629 Sed-Chr13:4291754 2.10E-107 dispersed
Sed14g1094 Sed-Chr14:20448004 Sed08g2730 Sed-Chr8:39108351 5.40E-52 transposed
Sed01g2176 Sed-Chr1:16420213 Sed08g2730 Sed-Chr8:39108351 2.10E-144 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39462 PF05687 BES1_N 2.70E-66 No_clan Sed TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2730 - - - 0.0