Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2730 ATGTCATCGGCGACCAGAATGCCGACATGGAAGGAGAGGGAGAACAACAAGCGCCGTGAGAGGCGCCGCCGTGCCATCGCCGCCAAGATCTTCCTCGGATTGCGAATGTACGGCAACTACAAGCTCCCCAAGCACTGCGACAACAACGAGGTCCTCAAAGCCCTCTGCAACGAAGCTGGATGGACTGTCCACGATGACGGCACTACCTACCGGAAGGGATGCAAGCCTGTGGAATGCGATATCATGGGCCGATCAGCTTCTGCAAGTCCGTGTTCATCTTATCAGCCGAGCCCATGTGCCTCTTATAACCCAAGTCCTGTGTCTTCTTCATTACAAAGCCCGATCTCTTCTCATTACACCATTAAAGGCAATGGCAATGGCAATGCTGCTGATCCCAATTCCCTTATCCCATGGCTGAAGAATCTTTCCTCAGGTTCATCATCAGCCTCCTCCAGGCTGCTGCCTTACGATAATCTTTACATTCCTGGTGGCTCCATAAGTGCACCTGTCACCCCTCCGTCGAGCTCCCCAACCGCTCGAACACCCAGAAAACCAAATGATTGGGACAATCATCCCGCAGTTGCTCCTGCTTGGGCTGCACAGCGATTCCCATGCTTGCCTGCATCTGCATCAACCCCACCAAGCCCTGGGCGCCCGCTGTTGGCTGATTCAGCATGGCTCGACAGTATGCGGATTCCTCAAAGTGGACCATCGTCTCCAACCTTCAGCCTTGTGGCAAGGAATCCGTTTGGTTTTATGGAGGCAATGTCCACGGGAGGGTCTCGTAATTGGACTCCTTCACAGAGTGGGGCATGCTCACCCACAGCCGCTGCAGGCACTGATCATACTTCAGATGTTGCAATGACGGATGGAGCCGTGTCGGAGTTTGCTTTCGGAAGTTGTTCGATTGGGTTGGTGAAGGCTTGGGAAGGAGAGAGAATTCAGGAATGCGTCTCTGATGATCTTGAACTTACACTTGGGAATTCAAGGACAAGGTAA 999 53.15 MSSATRMPTWKERENNKRRERRRRAIAAKIFLGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVHDDGTTYRKGCKPVECDIMGRSASASPCSSYQPSPCASYNPSPVSSSLQSPISSHYTIKGNGNGNAADPNSLIPWLKNLSSGSSSASSRLLPYDNLYIPGGSISAPVTPPSSSPTARTPRKPNDWDNHPAVAPAWAAQRFPCLPASASTPPSPGRPLLADSAWLDSMRIPQSGPSSPTFSLVARNPFGFMEAMSTGGSRNWTPSQSGACSPTAAAGTDHTSDVAMTDGAVSEFAFGSCSIGLVKAWEGERIQECVSDDLELTLGNSRTR 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 39108351 39111952 - Sed0024926.1 Sed08g2730 724506

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2730 332 MobiDBLite consensus disorder prediction 1 21 - -
Sed08g2730 332 Pfam BES1/BZR1 plant transcription factor, N-terminal 4 143 IPR008540 -
Sed08g2730 332 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 1 332 IPR033264 GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0009742(InterPro)
Sed08g2730 332 MobiDBLite consensus disorder prediction 258 278 - -
Sed08g2730 332 MobiDBLite consensus disorder prediction 166 192 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2730 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2177 Sed-Chr1:16420213 Sed08g2730 Sed-Chr8:39108351 2.10E-144 dispersed
Sed01g2178 Sed-Chr1:16420213 Sed08g2730 Sed-Chr8:39108351 9.50E-97 dispersed
Sed04g1537 Sed-Chr4:30179520 Sed08g2730 Sed-Chr8:39108351 1.20E-112 dispersed
Sed08g2730 Sed-Chr8:39108351 Sed13g0629 Sed-Chr13:4291754 2.10E-107 dispersed
Sed14g1094 Sed-Chr14:20448004 Sed08g2730 Sed-Chr8:39108351 5.40E-52 transposed
Sed01g2176 Sed-Chr1:16420213 Sed08g2730 Sed-Chr8:39108351 2.10E-144 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g261 Blo01g00870 Blo11g00263 . . . . Bma14g00977 . Cmo13g00609 Cmo18g00412 . . . . . Cpe09g00790 . . . . . . . . . . . . . . . . . Cone6ag0940 Cone9ag0944 . . Chy12g00053 . . . . Bda07g00961 . . . . Sed08g2730 . . Cma13g00580 Cma18g00433 Car13g00463 Car18g00409 . Cpe20g00481 Bhi08g02145 Tan05g2533 Cmetu12g0459 Lac10g0987 Hepe07g1834 . . Cla03g00693 Cam03g0700 Cec03g0673 Cco03g0709 Clacu03g0742 Cmu03g1334 Cre03g0981 Lsi02g00836 Csa01g02293 . Cme12g01261
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed10g1328 . 1 309 BZR Transcription Factor Family AT1G75080 58.7 2.1e-86 317.0
Sed14g1094 . 29 320 BZR Transcription Factor Family AT1G75080 57.0 3.3e-76 283.1
Sed10g1328 . 1 309 BZR Transcription Factor Family AT1G19350 58.6 3.9e-85 312.8
Sed14g1094 . 29 318 BZR Transcription Factor Family AT1G19350 57.0 1.6e-75 280.8
Sed14g1094 . 3 320 BZR Transcription Factor Family AT3G50750 55.1 6.1e-76 282.0
Sed10g1328 . 1 307 BZR Transcription Factor Family AT3G50750 53.4 1.9e-61 233.8
Sed04g1537 . 77 325 BZR Transcription Factor Family AT4G18890 53.4 2.8e-49 193.0
Sed13g0629 . 77 324 BZR Transcription Factor Family AT4G18890 53.4 3.1e-48 189.5
Sed01g2176 . 80 327 BZR Transcription Factor Family AT4G18890 50.4 4.5e-47 185.7
Sed01g2177 . 80 327 BZR Transcription Factor Family AT4G18890 50.4 4.5e-47 185.7
Sed01g2178 . 1 246 BZR Transcription Factor Family AT4G18890 50.4 3.8e-46 182.6
Sed13g0629 . 1 324 BZR Transcription Factor Family AT1G78700 72.5 5.1e-114 408.7
Sed04g1537 . 1 325 BZR Transcription Factor Family AT1G78700 71.9 1.6e-112 403.7
Sed01g2176 . 1 327 BZR Transcription Factor Family AT1G78700 68.7 3.6e-104 375.9
Sed01g2177 . 1 327 BZR Transcription Factor Family AT1G78700 68.7 3.6e-104 375.9
Sed08g2730 . 1 332 BZR Transcription Factor Family AT1G78700 63.4 1.2e-94 344.4
Sed01g2178 . 2 246 BZR Transcription Factor Family AT1G78700 62.7 1.1e-60 231.5
Sed14g1094 . 29 201 BZR Transcription Factor Family AT4G36780 78.0 7.4e-63 238.4
Sed10g1328 . 33 204 BZR Transcription Factor Family AT4G36780 59.3 3.0e-40 163.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000940 3 4 6 4 3 2 4 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 6 3 3 85
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39462 PF05687 BES1_N 2.70E-66 No_clan Sed TF