Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2733 ATGGCCGCCGCTGCGATTTTCTCGTCTTTACGGCGACGGAGATCGCCGTCGTTGGAGGTTTTTCTGGCCCCCGTTGATCTCTCCGATGTGGGTTTGGTGCAAACCCTGGCGATTGTTGCGACGGAGATCGTTTCGCGATTTTCTGAGAAATCTTTCTTCTTTCAGCGGCGAAATTCGAGATCTCTGATTAGGAAACTTGAGGTCTGTCTTGTGTTTTTGGAATTTTTGAAGGATAATGATGTGATTTTGCCTCAAACTGCGTTGCTCTGTTTGAAAGAGCTTTATTTGTTGTTGTATCGGTCTAAGATACTTCTTGATTATTGCTGTGAGTCTTGTAAGTTGTGGCTTTTGCTTCAGAATTATTCTATTTGTGGGCATTTTCATGATTTGAATTTGGAGTTGTTGACTTTTTTTGATGTTTTTCCTATTGGGGAAGTTGAATTGGGAGTGGATGTTAGAGAGCAGGTTGAGCTCTTGCAGAAGCAGTTGAGAAGGACCAAGATGTTTGTTGATGAACGCGAGGAAGCGTTGAGGATTCAATTCCTTTCGTTTCTCGACAAGTTTGAGAACGGTCTGCTTCCGAATCCGAGGGAAATGAGGGAGTTTTTTGTGGATAAGTTGGCCGTTCGGAATGCGAAGAGCTGTAGAATTGAAATCGAGTTTTTGGAGGAGCAGATTGTTAATCGCGAGGGCGACATTGAGCCTACGGTAGCAGTGTTAAATGGTTTCATTGCTCTGACTCGATACAGCAGGTTTTTCCTCTTTGGATTCGAGGACGATGAAGTTGAATCAGGAGCATCAAACCAGAAGAAACTGAAGAAGAATTTGATTACAGAGGAGATTGGTCAGACGTTTTTAACGATTCCAAGGGACTTCTGCTGTCCAGTATCACTGGATTTAATGAAAGACCCTGTGATCATTTCTACGGGTCAGACTTATGATCGAAGTTCAATTACTAGATGGTTGGAAGAAGGGCACAACACTTGCCCAAAGACAGGGCAAATGCTCATCCATACCCGCCTAGCCCCGAACCGTGCGTTGAGGAATTTGATTGTGCAATGGTGCATTGCCCATGGAGTTCCTTATGATCCACCAGAAGGGATGGATGCATCTGCAGAAAGTTATGCAATGGCTTCTCCCACACAAGCTGCACTTGAAGCCAACAGAGCAACATCTATGATTCTTATTAAACAGTTATCAATTGGATCGCCAGATGCACAGACCATTGCTGCTCGCGAGATTCGCTTTTTGGCTAAAACGGGGAAAGAGAACCGTGCTTTCATTGCAGAAGCTGGTGCCATCCCCCATCTCCAAAAGTTGCTGACTTCCCCAAACCCAGTAGCACAGGAGAACTCTGTGACTGCTATGCTTAACCTCTCGATATATGACAAGAACAAAAGTTTGATTATGAGTGAGGTAGGGTGTTTAGGATCAATAACCGAAGTGCTAAGATTCGGACACACTACCGAAGCACGGGAAAATGCTGCAGCTACGTTATTCAGCCTCTCTGCAGTTCATGGCTACAAGAAGAGAATAGCAGAGGAGAATGGTGCAGTTGAAGCCTTGGCAGGATTGTTGAGAGATGGTACCCTAAGAGGAAAGAAGGATGCTGTGACAGCTTTATTTAACCTCTCGACCCACACGGAAAACTGCTTTCGGATGATAGAGGCCGGGGCAGTAACAGCACTTGTAGGAGCATTGGGGAATGAGGGTGTTGCTGAAGAAGCAGCAGGTGCATTGGCCTTGGTTGTTCGACAGCCCATTGGGGCCGAAGCAGTCGGCAAAGAAGAGAGGGCTGTGGCAGGGTTGATGACAATGATGCGATGTGGGACACCAAGAGGTAAGGAGAATGCAGTAGCAGCTTTGCTCGAGTTATGCCGGAGTGGCGGAGCTTCCACAGCCGAGCAAGTGTTCAAGGCTCCTGCTTTGGCTGGGTTGCTCCAAATGCTCCTATTTACGGGTACTAAGCGAGCAAGAAGAAAAGCTGCTTCGCTGGCTAGAGTGTTCCAAAGATGTGAGCATGTTGCAATGCATTATGGCGGATTGGGTGTTGGTTATTCCTATGCAAATAACTCGGCTTCTAACAGGGATTCAAGCTTCCCGAGCGAGGTGTCTGTGCCGATATCCATCTCGGTACCTGTCGTATAG 2148 46.55 MAAAAIFSSLRRRRSPSLEVFLAPVDLSDVGLVQTLAIVATEIVSRFSEKSFFFQRRNSRSLIRKLEVCLVFLEFLKDNDVILPQTALLCLKELYLLLYRSKILLDYCCESCKLWLLLQNYSICGHFHDLNLELLTFFDVFPIGEVELGVDVREQVELLQKQLRRTKMFVDEREEALRIQFLSFLDKFENGLLPNPREMREFFVDKLAVRNAKSCRIEIEFLEEQIVNREGDIEPTVAVLNGFIALTRYSRFFLFGFEDDEVESGASNQKKLKKNLITEEIGQTFLTIPRDFCCPVSLDLMKDPVIISTGQTYDRSSITRWLEEGHNTCPKTGQMLIHTRLAPNRALRNLIVQWCIAHGVPYDPPEGMDASAESYAMASPTQAALEANRATSMILIKQLSIGSPDAQTIAAREIRFLAKTGKENRAFIAEAGAIPHLQKLLTSPNPVAQENSVTAMLNLSIYDKNKSLIMSEVGCLGSITEVLRFGHTTEARENAAATLFSLSAVHGYKKRIAEENGAVEALAGLLRDGTLRGKKDAVTALFNLSTHTENCFRMIEAGAVTALVGALGNEGVAEEAAGALALVVRQPIGAEAVGKEERAVAGLMTMMRCGTPRGKENAVAALLELCRSGGASTAEQVFKAPALAGLLQMLLFTGTKRARRKAASLARVFQRCEHVAMHYGGLGVGYSYANNSASNRDSSFPSEVSVPISISVPVV 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 39121108 39123848 - Sed0003900.1 Sed08g2733 724509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2733 715 PANTHER U BOX DOMAIN-CONTAINING 55 672 - -
Sed08g2733 715 SUPERFAMILY ARM repeat 394 675 IPR016024 -
Sed08g2733 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 432 474 IPR000225 GO:0005515(InterPro)
Sed08g2733 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 517 559 IPR000225 GO:0005515(InterPro)
Sed08g2733 715 SMART Ubox_2 291 354 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed08g2733 715 Pfam U-box domain 288 358 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed08g2733 715 CDD RING-Ubox_PUB 289 341 IPR045210 -
Sed08g2733 715 Gene3D - 374 680 IPR011989 -
Sed08g2733 715 FunFam RING-type E3 ubiquitin transferase 287 362 - -
Sed08g2733 715 FunFam RING-type E3 ubiquitin transferase 364 685 - -
Sed08g2733 715 ProSiteProfiles U-box domain profile. 287 361 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed08g2733 715 SMART arm_5 421 461 IPR000225 GO:0005515(InterPro)
Sed08g2733 715 SMART arm_5 506 546 IPR000225 GO:0005515(InterPro)
Sed08g2733 715 SMART arm_5 547 585 IPR000225 GO:0005515(InterPro)
Sed08g2733 715 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 362 IPR013083 -
Sed08g2733 715 SUPERFAMILY RING/U-box 277 362 - -
Sed08g2733 715 Pfam Armadillo/beta-catenin-like repeat 422 460 IPR000225 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g4161 Sed-Chr1:70369856 Sed08g2733 Sed-Chr8:39121108 3.20E-39 dispersed
Sed06g1631 Sed-Chr6:41106221 Sed08g2733 Sed-Chr8:39121108 1.70E-70 dispersed
Sed08g2733 Sed-Chr8:39121108 Sed13g1382 Sed-Chr13:19282203 5.40E-52 dispersed
Sed03g2428 Sed-Chr3:21156256 Sed08g2733 Sed-Chr8:39121108 1.60E-114 transposed
Sed08g1852 Sed-Chr8:33161824 Sed08g2733 Sed-Chr8:39121108 1.20E-14 transposed
Sed10g0347 Sed-Chr10:2128237 Sed08g2733 Sed-Chr8:39121108 2.60E-34 transposed
Sed14g0585 Sed-Chr14:5876462 Sed08g2733 Sed-Chr8:39121108 6.40E-111 transposed
Sed01g2174 Sed-Chr1:16404571 Sed08g2733 Sed-Chr8:39121108 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2733 - - - 0.0