Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2749 ATGGATATTGAGGAGGACATTCGTGCATTGGAACTTGATCCACCAGATGTTAATGGGGTTCCTTATCCAGATGCAAAGATGGAAGAAATTGTGAAATCCGATCATGTTGAAGAAGATTCAAAGATAGAAGAAATTGAGAAGTTCGACAAAGTGGAAGAAGATTTGAAGACAGATTATCATCCCCAGCCAGCCCAAGCTATCCACCTCGAAGAACAAGTGAAGGAGAACATATCTGGTAAGGGGAAGGAAGTTACTTTGACTGAAAATGAAGATGATGGTGGAGTGGAGTTGGATCGCAAAAGACACTTGAATGTTGTTTTCATTGGTCATGTTGATGCTGGTAAGTCTACAATTGGAGGTCAGATACTTTTCCTTAGCAATCAGGTTGATGAGCGCACAATCCAAAAGTACGAAAAAGAAGCAAAGGATAAAAGTAGAGAAAGCTGGTATATGGCATATATCATGGACACGAATGAAGAGGAGAGAGTCAAGGGTAAAACCGTTGAAGTGGGAAGGGCACATTTTGAAACAGAGTCCACAAGGTTTACGATTTTGGATGCTCCGGGTCACAAAAGTTATGTTCCAAATATGATCAGTGGGGCATCTCAAGCTGATATAGGGGTTCTGGTAATTTCTGCTAGGAAAGGAGAATTTGAAACTGGATATGAGAGAGGTGGACAGACTCGGGAGCATGTTTTACTGGCAAAAACGTTGGGTGTTGCTAAGCTTCTTGTTGTAGTGAATAAGATGGATGAGCCCACAGTTAAATGGTCCAAAGAAAGGTATGATGAGATAGAGTCTAAGATGGCGCCCTTCTTGAAGTCATCTGGATACAATGTAAAGAAAGATGTCCAGTTTTTACCTATATCTGGTCTTTATGGTATTAATATGAAAACAAGAGTGGATAAGAAAGTATGTCCGTGGTGGAATGGTCCATGCTTGTTCGAAATTCTTGATACAATTGAAGGTCCACCAAGAAATCCAAACGATCCATTTAGGATGCCTATCATTGACAAATTTAAGGACATGGGAACGACCCTTATGGGTAAGGTTGAATCTGGCACTGTGCGTGAGGGCGATTCCTTATGGGTAATGCCGAATAAGACTCAGGTGAAGGTTACTGCTGTAATGTGTGATGAAGATAAAGTCAAGCGTGCAGGGCCTGGCGAAAATCTTCGTGTTAGAATATCTGGAATTGAAGAAGAAGATATAATGGCTGGGTTTGTACTTTCAAGCATCGCAAGACCAATACCCGCTGTTACTGAGTTTACTGCGCAGTTGCACATTCTTGAGCTGCTGGATAATGCAATATTTACAGCTGGATACAATGCCATACTTCACATTCATGCTGTTGTTGAAGAATGTGAGATCATTGAGCTGCTACAGCAGTTTGATCCGAAGACAAAGAAACCTATGAAAAAGAAAGTTCTCTTTGTGAAGAATGGTGCAATTATTTTGTGCCGCATCCAGGTTAATAACTTGATCTGCATTGAGAAGTTTTCTGATTTTCCTCAGCTTGGAAGATTTACACTTCGTTCTGAAGGGAAGACAGTTGCTGTAGGAAAGGTCACTGATATTAATGCTGCAAACAATTAA 1596 40.79 MDIEEDIRALELDPPDVNGVPYPDAKMEEIVKSDHVEEDSKIEEIEKFDKVEEDLKTDYHPQPAQAIHLEEQVKENISGKGKEVTLTENEDDGGVELDRKRHLNVVFIGHVDAGKSTIGGQILFLSNQVDERTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETESTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVLLAKTLGVAKLLVVVNKMDEPTVKWSKERYDEIESKMAPFLKSSGYNVKKDVQFLPISGLYGINMKTRVDKKVCPWWNGPCLFEILDTIEGPPRNPNDPFRMPIIDKFKDMGTTLMGKVESGTVREGDSLWVMPNKTQVKVTAVMCDEDKVKRAGPGENLRVRISGIEEEDIMAGFVLSSIARPIPAVTEFTAQLHILELLDNAIFTAGYNAILHIHAVVEECEIIELLQQFDPKTKKPMKKKVLFVKNGAIILCRIQVNNLICIEKFSDFPQLGRFTLRSEGKTVAVGKVTDINAANN 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 39160409 39170070 - Sed0018744.1 Sed08g2749 724525

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2749 531 PANTHER TRANSLATION FACTOR 99 524 IPR050100 GO:0003747(PANTHER)|GO:0003924(PANTHER)|GO:0006412(PANTHER)|GO:0018444(PANTHER)
Sed08g2749 531 Coils Coil 127 147 - -
Sed08g2749 531 Gene3D Translation factors 329 413 - -
Sed08g2749 531 FunFam Putative translation elongation/initiation factor family protein 418 527 - -
Sed08g2749 531 Pfam Elongation factor Tu domain 2 344 410 IPR004161 GO:0005525(InterPro)
Sed08g2749 531 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 100 326 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed08g2749 531 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 80 324 - -
Sed08g2749 531 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 420 526 IPR009001 -
Sed08g2749 531 SUPERFAMILY Translation proteins 324 415 IPR009000 -
Sed08g2749 531 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 156 171 IPR031157 -
Sed08g2749 531 CDD eRF3_C_III 418 526 - -
Sed08g2749 531 Gene3D Translation factors 419 527 - -
Sed08g2749 531 CDD EF1_alpha 104 325 - -
Sed08g2749 531 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 328 414 - -
Sed08g2749 531 Gene3D - 85 323 IPR027417 -
Sed08g2749 531 Pfam GTP-eEF1A C-terminal domain-like 422 524 IPR054696 -
Sed08g2749 531 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 97 335 IPR027417 -
Sed08g2749 531 CDD eRF3_II 331 412 - -
Sed08g2749 531 PRINTS GTP-binding elongation factor signature 243 252 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed08g2749 531 PRINTS GTP-binding elongation factor signature 183 193 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed08g2749 531 PRINTS GTP-binding elongation factor signature 199 210 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed08g2749 531 PRINTS GTP-binding elongation factor signature 104 117 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed08g2749 531 Pfam Elongation factor Tu GTP binding domain 100 305 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2749 K03267 - - csv:101217809 888.641
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1754 Sed-Chr1:12733457 Sed08g2749 Sed-Chr8:39160409 7.30E-264 dispersed
Sed08g2749 Sed-Chr8:39160409 Sed09g0179 Sed-Chr9:1445372 1.80E-76 dispersed
Sed01g1753 Sed-Chr1:12733457 Sed08g2749 Sed-Chr8:39160409 5.60E-272 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g246 Blo04g00839 Blo16g00126 . . . Bpe13g00367 Bma06g00055 . Cmo13g01039 Cmo18g00045 . . . . . Cpe20g00140 . . . . . . . . . . . . . . . . . . . Lsi02g00219 Csa01g00700 Chy12g01412 Cme12g01846 . . Bda11g01780 . . Bpe15g00536 Bma03g00904 . Sed08g2749 . . Cma13g01003 Cma18g00058 Car13g00838 Car18g00051 Cpe09g01124 Cpe18g00872 Bhi08g01272 Tan05g2214 Cmetu12g0241 Lac10g0273 . . . Cla04g01062 Cam04g1105 Cec01g1619 Cco01g1666 Clacu04g1130 Cmu04g1114 Cre01g1415 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004032 3 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 44