Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2754 ATGTGGATGATGGGTTACGACGAGGGCGGAGATTTGAGCTTCGGTTCAGATTCGTTCGATAATGGTCGAAAGCTTCGGCCTCTCATTCCTCGCCCTATCTCTTCTTCTCCTCCTTTAAACCTTATCCACACCAATGATTTCTTCTCTCAATTTCATCATATGGATCAGAGCAAGAGAGAGTTGAATAATGCGCCACCAGCGCTGATGGTGGTGAGCTCGAGATGGAATCCAACTCCGGAACAGTTGAGATTACTGGAAGAATTGTACCGACGCGGGACTCGAACACCGTCGGCCGATCAAATTCAACATATCACAGCTCAGCTTCGTCGTTTTGGCAAGATTGAAGGTAAGAATGTGTTCTATTGGTTTCAAAATCACAAAGCTAGGGAGCGCCAAAAACGCCGACGACAGATGGAATCCAACGACCACGCCGCTCGCAATATCGAAATCCTCGAAAGGAAAGATTCAGGGTCTGGTAGGACAACAGTCTATGAAGTTGAACACACCAAAAACTGGCCTCCCTCTACAAACTGCAGTACACTTGTGGAGGAATCTGTTGCAATTCAAAGGACAGCAAAAGCTAGTCATGTAATGGCAGCAAGAGATTGCAGGGCAGAAAATGGATGGCTTCAATTTGAGGAATTGCATCAAAGAAGGAATAACAACAATTTTGCTGAAAAGAATGGTAATAATAACATCAACATCAACAACAACAATCCAACCTCGTTGCAGTTGATGCGTTGTTCGGCAACCGCTCTCGGTGGAGGTGGCCAACTGATGATGAACCCTCCCCCCATCACCACCACAGCCACAGTTACAACAACAATGCACCAAAAGGGTCATAATATTATTTCAAGCTTTGTTGAATTAGAAGACTTCGAAGAAGAAGAAGAAGAAGAAGGGTGTAATGGGGAATCAGAAACCCTACAACTTTTTCCATTGTGCAGTGACACAAGAAATGGTCAGATCATTGGAGGAAAAAATGGGTGTGAAATACTGGAAAATTCAGGCATGAATAGTACTAATCTGACTCCACTTCAGTTTTTTGAATTTCTGCCATTGAAGAATTGA 1071 43.88 MWMMGYDEGGDLSFGSDSFDNGRKLRPLIPRPISSSPPLNLIHTNDFFSQFHHMDQSKRELNNAPPALMVVSSRWNPTPEQLRLLEELYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQMESNDHAARNIEILERKDSGSGRTTVYEVEHTKNWPPSTNCSTLVEESVAIQRTAKASHVMAARDCRAENGWLQFEELHQRRNNNNFAEKNGNNNININNNNPTSLQLMRCSATALGGGGQLMMNPPPITTTATVTTTMHQKGHNIISSFVELEDFEEEEEEEGCNGESETLQLFPLCSDTRNGQIIGGKNGCEILENSGMNSTNLTPLQFFEFLPLKN 356
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 39203507 39206982 - Sed0002793.1 Sed08g2754 724530
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2754 356 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 69 352 IPR044555 GO:0003700(InterPro)|GO:0099402(InterPro)
Sed08g2754 356 CDD homeodomain 74 134 IPR001356 GO:0003677(InterPro)
Sed08g2754 356 FunFam WUSCHEL-related homeobox 4 72 139 - -
Sed08g2754 356 ProSiteProfiles 'Homeobox' domain profile. 78 133 IPR001356 GO:0003677(InterPro)
Sed08g2754 356 SMART HOX_1 70 137 IPR001356 GO:0003677(InterPro)
Sed08g2754 356 Gene3D - 72 139 - -
Sed08g2754 356 Pfam Homeodomain 73 132 IPR001356 GO:0003677(InterPro)
Sed08g2754 356 SUPERFAMILY Homeodomain-like 73 138 IPR009057 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2754 Sed-Chr8:39203507 Sed10g1226 Sed-Chr10:26171404 3.10E-24 dispersed
Sed05g2913 Sed-Chr5:40071573 Sed08g2754 Sed-Chr8:39203507 3.50E-22 transposed
Sed01g1765 Sed-Chr1:12883188 Sed08g2754 Sed-Chr8:39203507 3.80E-110 wgd
Sed12g2115 Sed-Chr12:31821764 Sed08g2754 Sed-Chr8:39203507 4.70E-40 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39464 PF00046 Homeodomain 4.90E-19 CL0123 Sed TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2754 - - - 0.0