Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed08g2754 | ATGTGGATGATGGGTTACGACGAGGGCGGAGATTTGAGCTTCGGTTCAGATTCGTTCGATAATGGTCGAAAGCTTCGGCCTCTCATTCCTCGCCCTATCTCTTCTTCTCCTCCTTTAAACCTTATCCACACCAATGATTTCTTCTCTCAATTTCATCATATGGATCAGAGCAAGAGAGAGTTGAATAATGCGCCACCAGCGCTGATGGTGGTGAGCTCGAGATGGAATCCAACTCCGGAACAGTTGAGATTACTGGAAGAATTGTACCGACGCGGGACTCGAACACCGTCGGCCGATCAAATTCAACATATCACAGCTCAGCTTCGTCGTTTTGGCAAGATTGAAGGTAAGAATGTGTTCTATTGGTTTCAAAATCACAAAGCTAGGGAGCGCCAAAAACGCCGACGACAGATGGAATCCAACGACCACGCCGCTCGCAATATCGAAATCCTCGAAAGGAAAGATTCAGGGTCTGGTAGGACAACAGTCTATGAAGTTGAACACACCAAAAACTGGCCTCCCTCTACAAACTGCAGTACACTTGTGGAGGAATCTGTTGCAATTCAAAGGACAGCAAAAGCTAGTCATGTAATGGCAGCAAGAGATTGCAGGGCAGAAAATGGATGGCTTCAATTTGAGGAATTGCATCAAAGAAGGAATAACAACAATTTTGCTGAAAAGAATGGTAATAATAACATCAACATCAACAACAACAATCCAACCTCGTTGCAGTTGATGCGTTGTTCGGCAACCGCTCTCGGTGGAGGTGGCCAACTGATGATGAACCCTCCCCCCATCACCACCACAGCCACAGTTACAACAACAATGCACCAAAAGGGTCATAATATTATTTCAAGCTTTGTTGAATTAGAAGACTTCGAAGAAGAAGAAGAAGAAGAAGGGTGTAATGGGGAATCAGAAACCCTACAACTTTTTCCATTGTGCAGTGACACAAGAAATGGTCAGATCATTGGAGGAAAAAATGGGTGTGAAATACTGGAAAATTCAGGCATGAATAGTACTAATCTGACTCCACTTCAGTTTTTTGAATTTCTGCCATTGAAGAATTGA | 1071 | 43.88 | MWMMGYDEGGDLSFGSDSFDNGRKLRPLIPRPISSSPPLNLIHTNDFFSQFHHMDQSKRELNNAPPALMVVSSRWNPTPEQLRLLEELYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQMESNDHAARNIEILERKDSGSGRTTVYEVEHTKNWPPSTNCSTLVEESVAIQRTAKASHVMAARDCRAENGWLQFEELHQRRNNNNFAEKNGNNNININNNNPTSLQLMRCSATALGGGGQLMMNPPPITTTATVTTTMHQKGHNIISSFVELEDFEEEEEEEGCNGESETLQLFPLCSDTRNGQIIGGKNGCEILENSGMNSTNLTPLQFFEFLPLKN | 356 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 39203507 | 39206982 | - | Sed0002793.1 | Sed08g2754 | 724530 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed08g2754 | 356 | PANTHER | WUSCHEL-RELATED HOMEOBOX 1-RELATED | 69 | 352 | IPR044555 | GO:0003700(InterPro)|GO:0099402(InterPro) | |
| Sed08g2754 | 356 | CDD | homeodomain | 74 | 134 | IPR001356 | GO:0003677(InterPro) | |
| Sed08g2754 | 356 | FunFam | WUSCHEL-related homeobox 4 | 72 | 139 | - | - | |
| Sed08g2754 | 356 | ProSiteProfiles | 'Homeobox' domain profile. | 78 | 133 | IPR001356 | GO:0003677(InterPro) | |
| Sed08g2754 | 356 | SMART | HOX_1 | 70 | 137 | IPR001356 | GO:0003677(InterPro) | |
| Sed08g2754 | 356 | Gene3D | - | 72 | 139 | - | - | |
| Sed08g2754 | 356 | Pfam | Homeodomain | 73 | 132 | IPR001356 | GO:0003677(InterPro) | |
| Sed08g2754 | 356 | SUPERFAMILY | Homeodomain-like | 73 | 138 | IPR009057 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed08g2754 | Sed-Chr8:39203507 | Sed10g1226 | Sed-Chr10:26171404 | 3.10E-24 | dispersed | |
| Sed05g2913 | Sed-Chr5:40071573 | Sed08g2754 | Sed-Chr8:39203507 | 3.50E-22 | transposed | |
| Sed01g1765 | Sed-Chr1:12883188 | Sed08g2754 | Sed-Chr8:39203507 | 3.80E-110 | wgd | |
| Sed12g2115 | Sed-Chr12:31821764 | Sed08g2754 | Sed-Chr8:39203507 | 4.70E-40 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 39464 | PF00046 | Homeodomain | 4.90E-19 | CL0123 | Sed | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed08g2754 | - | - | - | 0.0 |