Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2759 ATGGGAGATTTACCAATAAGTCCAGAGAGTGGCGGAGGGAGAGGTTGTTCTTCCTCATCCTTAATGGATAGCATATTAGGTCTTCTTCGTATTCGAATAATACGCGGTGTTAATCTCGCTGTTCGTGATGTTCGTAGCAGCGATCCATATATAGTTGTTAAATTGGCCAAACAGAAATTGAAGACTCGTGTAATTAAGAAGGATATTAATCCTGAATGGAATGAGGACCTTACTCTTTCTGTTCTCGATCCCAATAATTTAGTCAAACTGACGGTGTACGACCACGACACGTTTTCGATGGACGACAAGATGGGAGATGCGGAGTTCGAGATAAACTCATTCATAGAAGCACTGAAGATGGATTTGGCAGAGGTACCAAGTGGAACAGTAGTGACAAAAGTGCAACCAAGCAGGACAAATTGCCTGGCTGAAGAGAGTGCCATTGTTTGGGAAGAAGGCAAAGTTATTCAAAACATTTGCCTTCGTTTACGCAATGTTGAATGTGGTGAAGTTGAAGTCCAATTGCAATGGATTGATCTTCCTGGTTCTAAAGCTGCATTGATCACGAATGGGTCGACATGGTTCAACTTGAGAGCCAACACTATTCAAAGTAAAGATGCAGATGGTTTAGAGGGGTTACCTGCAAAAACAAAGGGGCTTTGGACATCAGTGTGGCGCCTACCGGGCATCTATCAATATGTAAATCGGTTCAAGTACTCTGCACTTATTCTCCATCGTGGTTTAGGTAAAAGATGA 756 42.46 MGDLPISPESGGGRGCSSSSLMDSILGLLRIRIIRGVNLAVRDVRSSDPYIVVKLAKQKLKTRVIKKDINPEWNEDLTLSVLDPNNLVKLTVYDHDTFSMDDKMGDAEFEINSFIEALKMDLAEVPSGTVVTKVQPSRTNCLAEESAIVWEEGKVIQNICLRLRNVECGEVEVQLQWIDLPGSKAALITNGSTWFNLRANTIQSKDADGLEGLPAKTKGLWTSVWRLPGIYQYVNRFKYSALILHRGLGKR 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 39246157 39248491 + Sed0012839.1 Sed08g2759 724535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2759 251 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 27 167 IPR035892 -
Sed08g2759 251 Gene3D C2 domain 23 200 IPR035892 -
Sed08g2759 251 SMART C2_3c 28 123 IPR000008 -
Sed08g2759 251 ProSiteProfiles C2 domain profile. 10 124 IPR000008 -
Sed08g2759 251 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 22 184 IPR044562 -
Sed08g2759 251 CDD C2_ArfGAP 26 169 - -
Sed08g2759 251 Pfam C2 domain 27 114 IPR000008 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0403 Sed-Chr8:2449594 Sed08g2759 Sed-Chr8:39246157 5.20E-68 dispersed
Sed08g2759 Sed-Chr8:39246157 Sed11g1445 Sed-Chr11:30266181 6.60E-53 dispersed
Sed01g1771 Sed-Chr1:12954990 Sed08g2759 Sed-Chr8:39246157 1.90E-97 wgd
Sed12g2119 Sed-Chr12:31868325 Sed08g2759 Sed-Chr8:39246157 5.70E-69 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2759 - - - 0.0