Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2761 ATGGTGCCCCATTTCGCATTCCCAAATTCCACAGAGCCTTCATCTTCAGCTTCTTCATCTTCTCCAAAATCTGAAATCCAATTCTCATTACGCAAAATGCATCTCCAAACTCGCAGACTCCACTTCCTTTTCCTAATCCTATGTCTCTGTTCCCTCTTCATCAACGCCCGCCCCTCCGTCATCCTCATCGCTCAAGACGAGCTCAAGGACGCTGCATTCCCCGACGCCGACGACTCATCGGACTCCGCCGACTGGGACGACTTTGGGGAGCCCCACCCCTTCCTTTCCGCCCTACAGCTTCACCCTGGGACTTGGCGCCCCTTGTTCGAGCCGGATTCCTCCGCCTCCGTCGCGCCGGAGGATCTGTACTACACTGCGTTGGGGAAGATCATGTCGGCGGTTGGCTCCGGTGACGCGAGGTTGATGGAGGAGGCGGTTGCGGATGTTGATCGTGGCGCGGGTGATGGGGATCCGCACGCGCGATCGGTGCTAGGGTTGCTGTATGGGATCGGGATGGTGAAGGAGACGGATAGGGTTAAGGCGTTCATGTATCATCATTTTGCTGCTGATGGAAATTTGGAATCTAAGATGGCTCTTGCCTATATTTATTTCAGGCAAGAGATGTATGAGAAAGCAGTCGAGCTGTATGCTGAATTGGCAGAGGTAGCTATTAATAGTTTATTAGTTTCCAAGGATTCTCCAGTAATTGAACCTGTGAGGATCCATAATGGAGCTGAGGAGAACAAGCAAGCCTTGAGGAAGTCTCGAGGGGAGGATGATGAGGACTTCCAAATTTTGGAATATCAGGCGCAGAAGGGTAATGCCGGAGCTATGTATAGAATGGGGCTATTTTACTATTTTGGACTTAGAGGTTTGAGGCGTGATCATGCAAAAGCATTGTCCTGGTTTTCCAATGCTGTGGAGAAAGGCGAACCGAGGTCTATGGAACTTCTCGGCGAGATATATGCAAGGGGTGCCGGTGTTGAGAGGAATTATACTAAGGCTCTTCAATGGCTAACTCAGGCATCCAAGCAGCCATCATTTTCTGCTTATAATGGCATGGGATATTTATACGTTAAGGGTTATGGAGTGGAAAAAAACTTTACTAAGGCCAAGGAGTACTTTGAGAAAGCTGCCGATAACGAGGAGTCTGGTGGTCATTATAATCTAGGAGTTATGTATCTTAAAGGAATTGGAGTAAAGAGAGATGTGAAGAAGGCATGTACTTATTTTATAGTTGCTACCAATGCTGGACAACCAAAGGCATTCTACCAGCTGGCAAAGATGTTTCATACTGGTGTTGGGCTTAAGAGGAATATTCCTATGGCTACTGCATTATACAAATTAGTTGCCGAACGAGGGCCTTGGAGTTCATTGTCTAGATGGGCATTGGAATCATATCTGAAAGCTGACATTGGCAAGGCATTCTTCTTGTATGCAAGAATGGCTGAGCTAGGATATGAGGTGGCACAAAGCAATGCAGCATGGATACTTGACAAATATGGAGAGCAAAGCATGTGTTTAGGAAAATCTGGCTTTTGCACAGATGCAGAAAGACATCAGAGAGCTCACTCTCTTTGGTGGCAAGCATCCGAGCAGGGCAACGAGCATGCTGCCTTATTGATTGGGGATGCGTATTACTTCGGTCGGGTATGTTCTCAGAGTTCGCGATACAGTTAA 1680 47.74 MVPHFAFPNSTEPSSSASSSSPKSEIQFSLRKMHLQTRRLHFLFLILCLCSLFINARPSVILIAQDELKDAAFPDADDSSDSADWDDFGEPHPFLSALQLHPGTWRPLFEPDSSASVAPEDLYYTALGKIMSAVGSGDARLMEEAVADVDRGAGDGDPHARSVLGLLYGIGMVKETDRVKAFMYHHFAADGNLESKMALAYIYFRQEMYEKAVELYAELAEVAINSLLVSKDSPVIEPVRIHNGAEENKQALRKSRGEDDEDFQILEYQAQKGNAGAMYRMGLFYYFGLRGLRRDHAKALSWFSNAVEKGEPRSMELLGEIYARGAGVERNYTKALQWLTQASKQPSFSAYNGMGYLYVKGYGVEKNFTKAKEYFEKAADNEESGGHYNLGVMYLKGIGVKRDVKKACTYFIVATNAGQPKAFYQLAKMFHTGVGLKRNIPMATALYKLVAERGPWSSLSRWALESYLKADIGKAFFLYARMAELGYEVAQSNAAWILDKYGEQSMCLGKSGFCTDAERHQRAHSLWWQASEQGNEHAALLIGDAYYFGRVCSQSSRYS 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 39249887 39254579 - Sed0018638.2 Sed08g2761 724537

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2761 559 FunFam ERAD-associated E3 ubiquitin-protein ligase component HRD3A 240 351 - -
Sed08g2761 559 Pfam Sel1 repeat 164 192 IPR006597 -
Sed08g2761 559 Pfam Sel1 repeat 424 454 IPR006597 -
Sed08g2761 559 Pfam Sel1 repeat 313 345 IPR006597 -
Sed08g2761 559 Pfam Sel1 repeat 349 381 IPR006597 -
Sed08g2761 559 Pfam Sel1 repeat 387 418 IPR006597 -
Sed08g2761 559 Pfam Sel1 repeat 468 487 IPR006597 -
Sed08g2761 559 Pfam Sel1 repeat 277 310 IPR006597 -
Sed08g2761 559 SUPERFAMILY HCP-like 256 381 - -
Sed08g2761 559 Gene3D Tetratricopeptide repeat domain 114 222 IPR011990 GO:0005515(InterPro)
Sed08g2761 559 Gene3D Tetratricopeptide repeat domain 240 557 IPR011990 GO:0005515(InterPro)
Sed08g2761 559 SMART sel1 275 311 IPR006597 -
Sed08g2761 559 SMART sel1 158 193 IPR006597 -
Sed08g2761 559 SMART sel1 384 419 IPR006597 -
Sed08g2761 559 SMART sel1 420 455 IPR006597 -
Sed08g2761 559 SMART sel1 312 347 IPR006597 -
Sed08g2761 559 SMART sel1 348 383 IPR006597 -
Sed08g2761 559 MobiDBLite consensus disorder prediction 1 22 - -
Sed08g2761 559 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 34 551 IPR044623 GO:0036503(InterPro)
Sed08g2761 559 MobiDBLite consensus disorder prediction 8 22 - -
Sed08g2761 559 SUPERFAMILY HCP-like 370 457 - -
Sed08g2761 559 SUPERFAMILY HCP-like 467 552 - -
Sed08g2761 559 SUPERFAMILY HCP-like 129 221 - -
Sed08g2761 559 ProSiteProfiles Intein DOD-type homing endonuclease domain profile. 163 224 IPR004042 GO:0004519(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2761 K14026 - - csv:101221047 885.174
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1773 Sed-Chr1:12969342 Sed08g2761 Sed-Chr8:39249887 9.70E-176 dispersed
Sed08g2760 Sed-Chr8:39249887 Sed08g2761 Sed-Chr8:39249887 7.80E-237 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g193 . . Bda06g00823 . . . . Bma12g01247 Cmo13g01021 Cmo18g00058 . . . . . Cpe20g00156 . . . . . . . . . . . . . . . . . . Cone19ag0338 Lsi02g00238 Csa01g00719 Chy12g01393 Cme12g01827 . Blo15g00056 . . Bpe07g01051 . . . Sed08g2761 . . Cma13g00986 Cma18g00076 Car13g00822 Car18g00067 Cpe09g01111 . Bhi08g01299 Tan05g2186 Cmetu12g0492 . Hepe07g2351 . . Cla04g01042 Cam04g1087 Cec01g1600 Cco01g1648 Clacu04g1113 Cmu04g1096 Cre01g1395 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006564 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 38