Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2770 ATGCAAACCCAGATGAGAACTCGTTCGATTCCTCTGTTTTTACTCTGTTTCTCTGTTCTACTGTTCACTGCCAAACCAGATCTTGGTTCTGATCGAACAGCGCTTTTGGCACTTCGTTCTGCTGTTGCCGGCCGAACTTTTCAGCTCTGGAATGTCACTGATCAGACCCCATGTTCTTGGCCTGGGATTCTATGCGAGGAAAATCGTGTCACTGTTCTTCGCCTTCCCGGAGCGGCTCTTTCCCGCGAGTTGCCGGTTGGGGTTTTCGGGAACTTGACCGGACTTCGCACTCTCAGTCTCCGGTTCAACTCGCTTTCCGGTCAGCTCCCGTCGGATCTCTCTGCTTGCGTTAATCTTCGCAACCTTTATTTGCAAGGTAATGGGTTTTCAGGCTCTGTTCCGGATTTTTTGTTCCAGTTTCCTGACCTTGTTCGTCTTAATCTGGCTTCCAATAAATTTTCCGGCGAGATCTCATTGGCGTTTAACAATTTGACCCGTCTTAAAACTCTGTACCTTGAAAACAATCGCCTATCTGGGTCTATACCGGATTTGAAGATCGTTCTGGATCAGTTCAATGTTTCTAATAATCAATTAAATGGGTCTGTTCCTAAGGGATTCCAATCGTTTTCTTCGAATTCGTTTTTGGGTAATTTTCTTTGTGGGCGTCCTCTTGAGATTTGCTCTGGTGATATTACTGTGCCAAAAGGGGAAAATGTCGGCGGTGGACACAAGAAAAAGCTGTCTGGTGGAGCCATTGCTGGGATTGTAATTGGATCTGTATTGGGTTTTGTGTTGTTACTTGTTATCTTAATGCTTTTGTGCCGAAAGAAGAGTGCTAAGACAACAAGTTCAGTTGATGTTGCTACAGTAAAGCATCCTGAAGTGGAAATTCAGGGCGGTAAGCCTCCTGGGGAGGTCGAGAACAGCGGATACGGTAACGTTTATACCGTGCCGCCAGCAGCTGCTGCTGTTGCCGTTGCAACGGTGGCGGCGGGGACTGCCAATGGCTCTAAGAAATTGGTGTTTTTTGGTAATGCTGCTAGAGTGTTTGATCTTGAGGATCTTTTGAGAGCTTCAGCAGAAGTGTTGGGGAAAGGAACTTTTGGGACTGCTTACAAAGCTGTTCTTGAAGTGGGTTCTGTTGTGGCTGTGAAGAGGTTGAAGGATGTTACCATAACTGAGAGGGAATTCAGAGAGAAGATTGAAGGTGTTGGATCTCTTGATCATGAAAATTTGGTCCCTCTTAGAGCTTACTATTTCAGTGGGGATGAGAAGCTTCTTGTCTATGATTACATGGCCATGGGAAGCTTGTCTGCTCTTTTGCATGGAAACAAAGGAGCTAGTAGGACTCCACTAAGTTGGGAAATCAGGACTGCAATTGCCCTTGGAGCTGCTCGTGGAATCGAATATCTGCATTCTCGAGGCCCTAATGCTTCCCATGGAAATGTAAAATCATCCAATATTCTTCTAACCAAATCCTATGATGCTCGAGTCTCCGATTTCGGTTTAGCACATCTTGTTGGACCACCATCCAGCCCCAACAGAGTTGCTGGATACCGTGCACCAGAGGTCACTGATCCTCGTAAAGTGTCCCAGAAGGCTGACGTCTATAGCTTTGGCGTATTGCTCTTGGAGCTTTTGACAGGGAAGGCTCCCACACACTCCCTTTCGAACGAGGAAGGAATCGATTTGCCTAGATGGGTGCAATCAGTTGTTAGAGAGGAGTGGACTTCTGAAGTTTTCGACCTCGAACTTCTTAGGTACCAAAACGTCGAGGAGGAGATGGTTCAACTATTGCAGCTTGCAGTCGATTGCGCAGCTCAGTATCCCGATAAGCGGCCCACAATGCGCGAAGTCACAAAGCGCATAGAAGAGCTTCGCCAATCCAGCATTCATGAAGTCGTCAATCCACAACCTGACGCAGCTCATGATTCAGATGGCGCGTCTTCTAGGTGA 1956 46.98 MQTQMRTRSIPLFLLCFSVLLFTAKPDLGSDRTALLALRSAVAGRTFQLWNVTDQTPCSWPGILCEENRVTVLRLPGAALSRELPVGVFGNLTGLRTLSLRFNSLSGQLPSDLSACVNLRNLYLQGNGFSGSVPDFLFQFPDLVRLNLASNKFSGEISLAFNNLTRLKTLYLENNRLSGSIPDLKIVLDQFNVSNNQLNGSVPKGFQSFSSNSFLGNFLCGRPLEICSGDITVPKGENVGGGHKKKLSGGAIAGIVIGSVLGFVLLLVILMLLCRKKSAKTTSSVDVATVKHPEVEIQGGKPPGEVENSGYGNVYTVPPAAAAVAVATVAAGTANGSKKLVFFGNAARVFDLEDLLRASAEVLGKGTFGTAYKAVLEVGSVVAVKRLKDVTITEREFREKIEGVGSLDHENLVPLRAYYFSGDEKLLVYDYMAMGSLSALLHGNKGASRTPLSWEIRTAIALGAARGIEYLHSRGPNASHGNVKSSNILLTKSYDARVSDFGLAHLVGPPSSPNRVAGYRAPEVTDPRKVSQKADVYSFGVLLLELLTGKAPTHSLSNEEGIDLPRWVQSVVREEWTSEVFDLELLRYQNVEEEMVQLLQLAVDCAAQYPDKRPTMREVTKRIEELRQSSIHEVVNPQPDAAHDSDGASSR 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 39295344 39298786 - Sed0008776.1 Sed08g2770 724546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2770 651 Gene3D Ribonuclease Inhibitor 143 227 IPR032675 -
Sed08g2770 651 Pfam Leucine rich repeat N-terminal domain 29 65 IPR013210 -
Sed08g2770 651 ProSiteProfiles Leucine-rich repeat profile. 166 188 IPR001611 GO:0005515(InterPro)
Sed08g2770 651 FunFam Probable inactive receptor kinase RLK902 28 185 - -
Sed08g2770 651 Gene3D Phosphorylase Kinase; domain 1 322 431 - -
Sed08g2770 651 Pfam Leucine rich repeat 82 128 IPR001611 GO:0005515(InterPro)
Sed08g2770 651 FunFam Probable inactive receptor kinase At1g48480 432 634 - -
Sed08g2770 651 ProSitePatterns Protein kinases ATP-binding region signature. 363 385 IPR017441 GO:0005524(InterPro)
Sed08g2770 651 Gene3D Ribonuclease Inhibitor 30 140 IPR032675 -
Sed08g2770 651 SUPERFAMILY L domain-like 31 211 - -
Sed08g2770 651 Pfam Protein kinase domain 361 621 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g2770 651 Gene3D Transferase(Phosphotransferase) domain 1 432 645 - -
Sed08g2770 651 PANTHER OS05G0588300 PROTEIN 10 640 IPR050994 -
Sed08g2770 651 SUPERFAMILY Protein kinase-like (PK-like) 361 629 IPR011009 -
Sed08g2770 651 Pfam Leucine Rich Repeat 166 183 IPR001611 GO:0005515(InterPro)
Sed08g2770 651 Pfam Leucine Rich Repeat 143 164 IPR001611 GO:0005515(InterPro)
Sed08g2770 651 ProSiteProfiles Protein kinase domain profile. 357 635 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g2770 651 MobiDBLite consensus disorder prediction 628 651 - -
Sed08g2770 651 FunFam pollen receptor-like kinase 1 327 431 - -
Sed08g2770 651 CDD STKc_IRAK 363 626 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2696 Sed-Chr5:38355047 Sed08g2770 Sed-Chr8:39295344 2.70E-159 dispersed
Sed08g1995 Sed-Chr8:34311587 Sed08g2770 Sed-Chr8:39295344 2.20E-201 dispersed
Sed08g2770 Sed-Chr8:39295344 Sed12g2419 Sed-Chr12:33925304 4.00E-118 dispersed
Sed07g2734 Sed-Chr7:42491058 Sed08g2770 Sed-Chr8:39295344 1.40E-50 transposed
Sed01g1779 Sed-Chr1:13018392 Sed08g2770 Sed-Chr8:39295344 5.70E-266 wgd
Sed12g2137 Sed-Chr12:31974919 Sed08g2770 Sed-Chr8:39295344 9.50E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79726 PF00069 Pkinase 2.00E-38 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2770 - - - 0.0