Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2774 ATGGCTCTGGTTCGTGATCGCCGCCCTGTGAACCTCCGCCTCCCCGACCTCTCCGACCACCGTCCCCGCTTCCCCCTCCCCCTCCCTCCCGCCGCCGCCTCCGCCGCCGCCTCCGCCGCTGCTCCAGCCGCCGCCGCCGCAATCTCCATCTCCGATCTCGACAAGCTCCAAGTCCTCGGCCACGGCAACGGCGGCACCGTCTACAAGGTCCGCCACAAACGCACCTCCGCCATCTACGCCCTCAAACTCGTCCACGGCGACTGCGATCCAACCGTCCGTCGCCAGGTCTTCCGCGAGATGGAGATCCTCCGCCGCACCGACTCTCCCTACGTCGTTCACTGCCATGGAATCTTCGAGAAACCGTCCGGCGACGTCACGATCCTGATGGAGTACATGGATCTCGGGTCGCTCGATTCGCTCATGAAAAAGAACTCCACGTTGCCGGAGACCACGCTCGCTCACGTGGCGCGTCAGGTTCTTCACGGCCTTCACTATCTCCACTCTCACAAAATCATTCATCGCGATATCAAACCGTCGAATCTGTTGGTGAACAAGAACATGGAGGTTAAAATCGCCGATTTCGGTGTGAGTAAAATCATGTGCAGGTCTCTGGACAATTGCAATTCCTACGTCGGCACCTGCGCTTACATGAGTCCGGAGCGGTTCGATCCGGAGACTTACGGCGGAAATTACAACGGCTACGCCGGAGACATTTGGAGCTTAGGGCTTACTCTTCTCGAACTCTATTTAGGCCATTTTCCGTTTCTTCCGCCCGGTCAGAGACCAGATTGGGCGACTCTGATGTGTGCGATTTGCTTCGGAGATCCGCCGTCGCTGCCGCCGGATGCGACGGAGCAGTTCCGGAGCTTCGTCGAGTGCTGTTTGCAGAAGGAATCGAGTAAGAGATGGACGGTGGCGCAGTTGCTGAATCATCCGTTTGTTTGTAAGGAATCGAAATCCGATCGGTGA 969 58.41 MALVRDRRPVNLRLPDLSDHRPRFPLPLPPAAASAAASAAAPAAAAAISISDLDKLQVLGHGNGGTVYKVRHKRTSAIYALKLVHGDCDPTVRRQVFREMEILRRTDSPYVVHCHGIFEKPSGDVTILMEYMDLGSLDSLMKKNSTLPETTLAHVARQVLHGLHYLHSHKIIHRDIKPSNLLVNKNMEVKIADFGVSKIMCRSLDNCNSYVGTCAYMSPERFDPETYGGNYNGYAGDIWSLGLTLLELYLGHFPFLPPGQRPDWATLMCAICFGDPPSLPPDATEQFRSFVECCLQKESSKRWTVAQLLNHPFVCKESKSDR 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 39332288 39333529 - Sed0015698.1 Sed08g2774 724550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2774 322 PIRSF ILK 31 311 - -
Sed08g2774 322 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 45 317 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Sed08g2774 322 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g2774 322 ProSitePatterns Protein kinases ATP-binding region signature. 59 82 IPR017441 GO:0005524(InterPro)
Sed08g2774 322 Pfam Protein kinase domain 55 314 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g2774 322 FunFam Mitogen-activated protein kinase kinase 29 129 - -
Sed08g2774 322 ProSiteProfiles Protein kinase domain profile. 53 314 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g2774 322 CDD PKc_MAPKK_plant_like 51 314 - -
Sed08g2774 322 SMART serkin_6 53 314 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g2774 322 SUPERFAMILY Protein kinase-like (PK-like) 51 316 IPR011009 -
Sed08g2774 322 Gene3D Phosphorylase Kinase; domain 1 32 133 - -
Sed08g2774 322 FunFam Mitogen-activated protein kinase 2 134 322 - -
Sed08g2774 322 Gene3D Transferase(Phosphotransferase) domain 1 135 322 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0045 Sed-Chr6:259746 Sed08g2774 Sed-Chr8:39332288 2.30E-83 dispersed
Sed06g2275 Sed-Chr6:46280110 Sed08g2774 Sed-Chr8:39332288 5.30E-80 dispersed
Sed08g2774 Sed-Chr8:39332288 Sed12g1735 Sed-Chr12:28490804 1.30E-58 dispersed
Sed01g1782 Sed-Chr1:13052435 Sed08g2774 Sed-Chr8:39332288 3.80E-146 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79727 PF00069 Pkinase 1.30E-63 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2774 K20604 - csv:101203133 546.969