Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed08g2777 | ATGCTGGCTGATCTCTCAGCTTCACCTCCTTGTTTTGAGCCTTTGTCTAATTGCTTTCAAAACAATGGAACCAATAACAAAAGAAAAAGAAGACCTGCAGGAACTCCAGACCCAGACGCAGAAGTGGTGTCTCTGTCTCCAAAAACCCTATTGGAATCAGATCGCTACGTATGCGAGATCTGCAACCAGGGGTTTCAGAGAGATCAAAACCTCCAAATGCATCGACGACGACACAAGGTGCCGTGGAAGCTGTCGAAGAAGACGGAAGCGGCAGCGACGGTGAGAAGACGGGTGTTTGTTTGCCCGGAGCCGAGCTGCTTACACCATAACCCTAATCATGCTTTGGGGGATTTGGTGGGAATTAAGAAGCACTTTAGAAGAAAACATAGTAACCATAAGCAATGGGTTTGTGAAAAATGCTCTAAAGGATATGCTGTTCAATCTGATTACAAAGCTCACCTTAAGACCTGTGGAACTAGAGGCCATTCCTGTGATTGCGGTCGAGTTTTCTCCAGGGTGGAAAGTTTCATAGAACATCAAGATACTTGCAAATTGGGTCATCATAAAAAATCAGAAAAAATTCCATCTTTACAACTATCACCACCATGTTTATCAAGAACAGCTTCAAGTCCAACTCCAAGTCCTTCTTCAGACACAAATTTCAACTTCTTACACAAACACCAAACATTTCTTTCAACTCATGCAGACAAATCATCCCCAATATCAACACCAAAAACTCCCCAAAAATTGATTAGTCATCCTCAAAATTTAGACCTTCAACTTTCCACAACTTCAACAATTTCTCCAAAAAGACATGAAATTTACTCAACCCATTTGGAGCTCTCAATTGGGTCTTGCAATTATGGTGAGAAAAAAGAGGGAGCCAAAGAGCAAATGAGAGTGGCTGAAGAAGCAAGAAATGAAGCAAAGAAGCAAATTGAATTGGCTGAGAAAGAATTGGCCAATGCCAAGAGAATGAGACTACAAGCTCAAGCTGAGATACAAAGAGCCCTTGCTTTGAAAGAACATGCCATAACCAAAATCAACTCCACCATCATCCAAATCACTTGCCAAGTTTGTAGGCAACATTTTCATCCATTGCCAAAAATTTGA | 1113 | 41.51 | MLADLSASPPCFEPLSNCFQNNGTNNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLSKKTEAAATVRRRVFVCPEPSCLHHNPNHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDTCKLGHHKKSEKIPSLQLSPPCLSRTASSPTPSPSSDTNFNFLHKHQTFLSTHADKSSPISTPKTPQKLISHPQNLDLQLSTTSTISPKRHEIYSTHLELSIGSCNYGEKKEGAKEQMRVAEEARNEAKKQIELAEKELANAKRMRLQAQAEIQRALALKEHAITKINSTIIQITCQVCRQHFHPLPKI | 370 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 39353235 | 39355780 | - | Sed0002668.1 | Sed08g2777 | 724553 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed08g2777 | 370 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 134 | 158 | - | - | |
Sed08g2777 | 370 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 95 | 129 | - | - | |
Sed08g2777 | 370 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 58 | 78 | IPR013087 | - | |
Sed08g2777 | 370 | Coils | Coil | 292 | 340 | - | - | |
Sed08g2777 | 370 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 56 | 78 | IPR013087 | - | |
Sed08g2777 | 370 | SUPERFAMILY | beta-beta-alpha zinc fingers | 55 | 155 | IPR036236 | - | |
Sed08g2777 | 370 | Pfam | Zinc finger, C2H2 type | 56 | 78 | IPR013087 | - | |
Sed08g2777 | 370 | SMART | c2h2final6 | 135 | 162 | IPR013087 | - | |
Sed08g2777 | 370 | SMART | c2h2final6 | 99 | 129 | IPR013087 | - | |
Sed08g2777 | 370 | SMART | c2h2final6 | 56 | 78 | IPR013087 | - | |
Sed08g2777 | 370 | MobiDBLite | consensus disorder prediction | 22 | 43 | - | - | |
Sed08g2777 | 370 | MobiDBLite | consensus disorder prediction | 187 | 217 | - | - | |
Sed08g2777 | 370 | FunFam | protein indeterminate-domain 12-like | 35 | 105 | - | - | |
Sed08g2777 | 370 | MobiDBLite | consensus disorder prediction | 198 | 217 | - | - | |
Sed08g2777 | 370 | Gene3D | Classic Zinc Finger | 34 | 99 | - | - | |
Sed08g2777 | 370 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 21 | 332 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed08g2009 | Sed-Chr8:34413558 | Sed08g2777 | Sed-Chr8:39353235 | 2.10E-102 | dispersed | |
Sed08g2010 | Sed-Chr8:34413558 | Sed08g2777 | Sed-Chr8:39353235 | 2.10E-102 | dispersed | |
Sed08g2777 | Sed-Chr8:39353235 | Sed11g1488 | Sed-Chr11:30634818 | 3.50E-95 | dispersed | |
Sed01g1788 | Sed-Chr1:13117074 | Sed08g2777 | Sed-Chr8:39353235 | 7.80E-149 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39467 | PF00096 | zf-C2H2 | 0.0033 | CL0361 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed08g2777 | K25871 | - | csv:101210748 | 590.882 |