Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2777 ATGCTGGCTGATCTCTCAGCTTCACCTCCTTGTTTTGAGCCTTTGTCTAATTGCTTTCAAAACAATGGAACCAATAACAAAAGAAAAAGAAGACCTGCAGGAACTCCAGACCCAGACGCAGAAGTGGTGTCTCTGTCTCCAAAAACCCTATTGGAATCAGATCGCTACGTATGCGAGATCTGCAACCAGGGGTTTCAGAGAGATCAAAACCTCCAAATGCATCGACGACGACACAAGGTGCCGTGGAAGCTGTCGAAGAAGACGGAAGCGGCAGCGACGGTGAGAAGACGGGTGTTTGTTTGCCCGGAGCCGAGCTGCTTACACCATAACCCTAATCATGCTTTGGGGGATTTGGTGGGAATTAAGAAGCACTTTAGAAGAAAACATAGTAACCATAAGCAATGGGTTTGTGAAAAATGCTCTAAAGGATATGCTGTTCAATCTGATTACAAAGCTCACCTTAAGACCTGTGGAACTAGAGGCCATTCCTGTGATTGCGGTCGAGTTTTCTCCAGGGTGGAAAGTTTCATAGAACATCAAGATACTTGCAAATTGGGTCATCATAAAAAATCAGAAAAAATTCCATCTTTACAACTATCACCACCATGTTTATCAAGAACAGCTTCAAGTCCAACTCCAAGTCCTTCTTCAGACACAAATTTCAACTTCTTACACAAACACCAAACATTTCTTTCAACTCATGCAGACAAATCATCCCCAATATCAACACCAAAAACTCCCCAAAAATTGATTAGTCATCCTCAAAATTTAGACCTTCAACTTTCCACAACTTCAACAATTTCTCCAAAAAGACATGAAATTTACTCAACCCATTTGGAGCTCTCAATTGGGTCTTGCAATTATGGTGAGAAAAAAGAGGGAGCCAAAGAGCAAATGAGAGTGGCTGAAGAAGCAAGAAATGAAGCAAAGAAGCAAATTGAATTGGCTGAGAAAGAATTGGCCAATGCCAAGAGAATGAGACTACAAGCTCAAGCTGAGATACAAAGAGCCCTTGCTTTGAAAGAACATGCCATAACCAAAATCAACTCCACCATCATCCAAATCACTTGCCAAGTTTGTAGGCAACATTTTCATCCATTGCCAAAAATTTGA 1113 41.51 MLADLSASPPCFEPLSNCFQNNGTNNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLSKKTEAAATVRRRVFVCPEPSCLHHNPNHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDTCKLGHHKKSEKIPSLQLSPPCLSRTASSPTPSPSSDTNFNFLHKHQTFLSTHADKSSPISTPKTPQKLISHPQNLDLQLSTTSTISPKRHEIYSTHLELSIGSCNYGEKKEGAKEQMRVAEEARNEAKKQIELAEKELANAKRMRLQAQAEIQRALALKEHAITKINSTIIQITCQVCRQHFHPLPKI 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 39353235 39355780 - Sed0002668.1 Sed08g2777 724553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2777 370 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 134 158 - -
Sed08g2777 370 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 95 129 - -
Sed08g2777 370 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
Sed08g2777 370 Coils Coil 292 340 - -
Sed08g2777 370 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 78 IPR013087 -
Sed08g2777 370 SUPERFAMILY beta-beta-alpha zinc fingers 55 155 IPR036236 -
Sed08g2777 370 Pfam Zinc finger, C2H2 type 56 78 IPR013087 -
Sed08g2777 370 SMART c2h2final6 135 162 IPR013087 -
Sed08g2777 370 SMART c2h2final6 99 129 IPR013087 -
Sed08g2777 370 SMART c2h2final6 56 78 IPR013087 -
Sed08g2777 370 MobiDBLite consensus disorder prediction 22 43 - -
Sed08g2777 370 MobiDBLite consensus disorder prediction 187 217 - -
Sed08g2777 370 FunFam protein indeterminate-domain 12-like 35 105 - -
Sed08g2777 370 MobiDBLite consensus disorder prediction 198 217 - -
Sed08g2777 370 Gene3D Classic Zinc Finger 34 99 - -
Sed08g2777 370 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 332 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2009 Sed-Chr8:34413558 Sed08g2777 Sed-Chr8:39353235 2.10E-102 dispersed
Sed08g2010 Sed-Chr8:34413558 Sed08g2777 Sed-Chr8:39353235 2.10E-102 dispersed
Sed08g2777 Sed-Chr8:39353235 Sed11g1488 Sed-Chr11:30634818 3.50E-95 dispersed
Sed01g1788 Sed-Chr1:13117074 Sed08g2777 Sed-Chr8:39353235 7.80E-149 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39467 PF00096 zf-C2H2 0.0033 CL0361 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2777 K25871 - csv:101210748 590.882