Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2788 ATGGAGTTGGGCAACACGCAGGCTGAATTAGGGGTCGGCAAATATGAACACGCTCCCATTTCTCTTCCGCATTATTTGTGGATTTCCAACCATTTCCGCCAATCAATACCGATCTCTTTTTCTTCCCTCTTCTTCGCCGTTCCCGAAAATTCTCTGTCTCGGAGGCGACTTCTTAAGAAATCGCAGCGAATCGATCCGTCAAATCCGAGTTCAATCATGAATCAGAAGGCCGCCGTCTCTAAGGAGCTCGAAGCTAAACATAGAAAGATTTTGGAAGGTCTTGTCAAGCTTCCAGAAAACAGGGAATGTGCGGACTGCCGGAGCAAGGCTCCACGATGGGCAAGTGTAAATCTTGGAATTTTTATATGCATGCAGTGTTCGGGTATTCATAGGAGTCTTGGAGTACATATTTCAAAGGTACGATCTACTACCCTTGATACATGGCTACCGGAACAGGTTGCTTTTATGCAGTCTATGGGAAATGAGAGGTCGAATTATTACTGGGAAGCAGAACTACCACCAAATTTTGATGGGAGAGGGAATCAAACTTTCGCTCGGGCCAAGTACGAAGAGAAAAGATGGGTTTCTAAGAACAGAACTTACCCAACTCCACAAGGTGAAAATCGGAGTATTAATTGTGATTCTGTTGAAATTGGGCCTAAGAGCTCTATTTCAAAGAAGGTGAGGAAACATTCTCTTGAGGAAGAGATTCTCACAAAGCACGTGATAAAAGCAACTCCCACAATAGCAAAACCACGTGGGAATTCTATAGATATGAAGAACCATGTGATTGCTTTAGCTCCTCCAAAAGGGCCTTCACTAATGAAAGAAATTGATACATCCACAAAAAATACAAATGGATCCACAGATCTCTTCAAATATGTTCAAGATGCAAACCAGGAATGCTCTAGCGTAATTCCAGATCGTTGGGCAACTTTCGATTGA 945 43.07 MELGNTQAELGVGKYEHAPISLPHYLWISNHFRQSIPISFSSLFFAVPENSLSRRRLLKKSQRIDPSNPSSIMNQKAAVSKELEAKHRKILEGLVKLPENRECADCRSKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPEQVAFMQSMGNERSNYYWEAELPPNFDGRGNQTFARAKYEEKRWVSKNRTYPTPQGENRSINCDSVEIGPKSSISKKVRKHSLEEEILTKHVIKATPTIAKPRGNSIDMKNHVIALAPPKGPSLMKEIDTSTKNTNGSTDLFKYVQDANQECSSVIPDRWATFD 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 39402581 39408871 - Sed0000369.1 Sed08g2788 724564

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2788 314 FunFam stromal membrane-associated protein 1 isoform X1 73 200 - -
Sed08g2788 314 Pfam Putative GTPase activating protein for Arf 89 197 IPR001164 GO:0005096(InterPro)
Sed08g2788 314 SMART arf_gap_3 88 202 IPR001164 GO:0005096(InterPro)
Sed08g2788 314 Gene3D Arf GTPase activating protein 70 202 IPR038508 -
Sed08g2788 314 PRINTS HIV Rev interacting protein signature 100 119 IPR001164 GO:0005096(InterPro)
Sed08g2788 314 PRINTS HIV Rev interacting protein signature 119 136 IPR001164 GO:0005096(InterPro)
Sed08g2788 314 PRINTS HIV Rev interacting protein signature 140 161 IPR001164 GO:0005096(InterPro)
Sed08g2788 314 ProSiteProfiles ARF GTPase-activating proteins domain profile. 88 202 IPR001164 GO:0005096(InterPro)
Sed08g2788 314 SUPERFAMILY ArfGap/RecO-like zinc finger 87 197 IPR037278 -
Sed08g2788 314 CDD ArfGap 91 189 - -
Sed08g2788 314 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 73 302 IPR044520 GO:0005096(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2788 K12486 - - csv:101211239 410.609
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3146 Sed-Chr4:42265152 Sed08g2788 Sed-Chr8:39402581 6.40E-57 dispersed
Sed05g0297 Sed-Chr5:1880111 Sed08g2788 Sed-Chr8:39402581 2.20E-18 dispersed
Sed05g0298 Sed-Chr5:1880111 Sed08g2788 Sed-Chr8:39402581 1.60E-18 dispersed
Sed07g2628 Sed-Chr7:41737839 Sed08g2788 Sed-Chr8:39402581 1.60E-55 dispersed
Sed08g2788 Sed-Chr8:39402581 Sed10g0063 Sed-Chr10:385591 3.10E-20 dispersed
Sed01g1791 Sed-Chr1:13170146 Sed08g2788 Sed-Chr8:39402581 1.60E-112 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g969 . . . . . . . . Cmo13g01001 Cmo18g00070 . . . . . Cpe20g00174 . . . . . . . . . . . . . . . . . . . Lsi02g00263 Csa01g00743 Chy12g01370 Cme12g01802 . . . . . . . . Sed08g2788 . . Cma13g00966 Cma18g00093 Car13g00800 Car18g00083 Cpe09g01097 . Bhi08g01335 Tan05g2152 Cmetu12g1789 Lac10g0317 Hepe07g2326 . . Cla01g01468 Cam01g1537 Cec01g1576 Cco01g1624 Clacu01g1561 Cmu01g1451 Cre01g1373 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011457 0 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 0 1 1 1 1 1 2 2 1 31