Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2797 ATGGGTCGCCAATCTGTTGCCAAGCTCATAGGTTCCGCCATTAATCGAAAAGCTTCTTCGTCTTCATCATCATCTGTCCCGGCGTCGCAGATTCGGCATTACGCGGCGGCTCCGCCACCACCGCCGGCGGTGTTTGTAGATAAGAACACTCGCGTAATATGTCAAGGGATCACTGGTAAGAACGGCACATTCCACACAGAGCAGGCTATCGAATATGGCACCAAAATGGTTGGTGGTGTGACGCCAAAGAAAGGTGGAACAGAACACTTGGGGCTTCCTGTTTTTAATTCAGTTGCAGAAGCCAAAGCTGAAACAAAGGCCAATGCATCAGTTATTTATGTCCCTCCACCATTTGCTGCTGCTGCTATCTTGGAGGCAATGGAAGCTGAGCTAGATCTTGTAGTATGCATAACGGAAGGGATCCCACAGCATGATATGGTGCGAGTTAAGGCTGCTTTAAACAGACAATCTAAAACTAGATTGATTGGCCCTAACTGCCCTGGTATAATCAAGCCTGGAGAGTGTAAAATCGGAATTATGCCAGGATACATCCACAAACCTGGGCGCATTGGCATTGTGTCACGATCTGGTACCTTGACCTATGAAGCGGTTTTCCAAACAACTGCCGTTGGCCTTGGACAATCCACATGCGTAGGTATTGGAGGGGATCCCTTTAATGGGACAAACTTTGTTGATTGCATCGAGAAGTTTCTTGCTGATCCTCAAACAGAAGGTATTGTTCTTATTGGAGAGATAGGTGGGACTGCGGAAGAGGATGCTGCTGCTTTGATAAAGGAAAGCGGGACTGATAAGCCTATTGTTGGCTTCATTGCTGGCCTAACTGCTCCTCCAGGCCGTCGCATGGGTCATGCTGGCGCCATAGTTTCGGGTGGAAAAGGTACAGCCCAAGACAAAATCAAGACTTTACGAGAAGCTGGAGTAACAGTGGTGGAGTCACCTGCGAAAATTGGCGCTGCAATGCTTGATGTTTTCAAACAGAGAGGCCTTGTTTGA 1014 48.13 MGRQSVAKLIGSAINRKASSSSSSSVPASQIRHYAAAPPPPPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCIEKFLADPQTEGIVLIGEIGGTAEEDAAALIKESGTDKPIVGFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLDVFKQRGLV 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 39432057 39437072 - Sed0019851.1 Sed08g2797 724573

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2797 337 Hamap Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 42 331 IPR005810 GO:0003824(InterPro)
Sed08g2797 337 FunFam Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial 163 336 - -
Sed08g2797 337 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family active site. 279 292 IPR017440 -
Sed08g2797 337 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 43 164 IPR036291 -
Sed08g2797 337 NCBIfam succinate--CoA ligase subunit alpha 45 330 IPR005810 GO:0003824(InterPro)
Sed08g2797 337 Pfam CoA binding domain 47 140 IPR003781 -
Sed08g2797 337 Gene3D - 163 336 IPR016102 -
Sed08g2797 337 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 1. 194 223 IPR033847 -
Sed08g2797 337 Gene3D - 43 162 - -
Sed08g2797 337 SUPERFAMILY Succinyl-CoA synthetase domains 165 333 IPR016102 -
Sed08g2797 337 SMART CoA_binding_2 45 141 IPR003781 -
Sed08g2797 337 PRINTS Succinyl-CoA synthase signature 123 140 - -
Sed08g2797 337 PRINTS Succinyl-CoA synthase signature 219 237 - -
Sed08g2797 337 PRINTS Succinyl-CoA synthase signature 283 300 - -
Sed08g2797 337 PRINTS Succinyl-CoA synthase signature 250 263 - -
Sed08g2797 337 FunFam Succinate--CoA ligase [ADP-forming] subunit alpha 42 162 - -
Sed08g2797 337 Pfam CoA-ligase 193 314 IPR005811 GO:0003824(InterPro)
Sed08g2797 337 PANTHER SUCCINYL-COA LIGASE SUBUNIT ALPHA 30 335 - GO:0004775(PANTHER)|GO:0004776(PANTHER)|GO:0005739(PANTHER)|GO:0006099(PANTHER)|GO:0009361(PANTHER)
Sed08g2797 337 PIRSF SucCS_alpha 41 334 IPR005810 GO:0003824(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2797 K01899 - - csv:101206269 615.15
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1801 Sed-Chr1:13208815 Sed08g2797 Sed-Chr8:39432057 1.40E-170 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g960 . . . . Bpe12g00634 . . . Cmo13g00995 Cmo18g00076 . . . . . Cpe20g00178 . . . . . . . . . . . . . . . . . . . Lsi02g00271 Csa01g00750 Chy12g01362 Cme12g01794 Blo13g00104 . . . . . . Bma08g00126 Sed08g2797 . . Cma13g00961 Cma18g00099 Car13g00797 Car18g00089 Cpe09g01091 . Bhi08g01346 Tan05g2142 Cmetu12g0797 . Hepe07g2322 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011285 1 2 1 1 1 0 2 0 0 1 0 0 1 1 1 2 0 1 2 0 1 1 0 1 1 1 1 2 1 2 28