Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2805 ATGGTGATAGACTTCAAATTAACTTATCCAAGCGGCACTGCAACCGCCCATTTGATTAATAGTTTCCATACTCCCCGAGGAGCTGCACTAGCAAAGAAACAAGTGAGACTGCTTGGCAGATTTTTCTCTCTGAGCTTCTTGTGGGGCTTTTTTCAATGGTTCTTTACCTCTGCAGATGGTTGTGGGTTTGCACATTTTCCATCATTCGGCCTCAAAGCATATGCAAACAAGTTTTACTTTGACTTCTCGACGACATACATTGGAGTAGGGATGATTTGCCCCCACATAATAAATGTATCGGTACTTGTTGGAGGAATTATCTCTTGGGGTATTATGTGGCCTCTCATAGAAGATAAAAAGGGTCAATGGTATAGTGAGAAATTGAACTTTGATGACTTAAGTGGACTTCAAGGCTACAAGGTATTTATAGCAATAGCTATAATTCTTGGTGATGGCCTGTACAACTTCTTCAAAGTATTGACTCGGACCCTCTCCGGCTTGCTCTACCAACTTCAACACAAAAGAGAGATCGAAGAATTTTCATCGGAAAATTCATCCAGGTCTGAGTTTTCTTATGATGATGAACGAAGGAAACAACTTTTTCTGAAGGATCAAATACCAATCTGGTTTGCCATTGGAGGCTATGTTGTAATTGCTCTAGTGTCGATTAACACTCTTCCACATATCTTTACCCAGCTAAAGTGGTATTATATTTTGGTCATCTACATCTTTGCTCCTGTCTTGGCTTTCTGTAATGCGTATGGATGTGGACTCACGGATTGGTCGCTGGCATCGACTTATGGAAAGCTTGCGATCTTCACGATTGGTGCGTGGGCAGGGCCGTTGCATGGGGGAGTCATTGCTGGTTTATCAGCTTGTGGGGTCATGATGAATATTGTCTCCACTGCCTCTGACCTAATGCAGGATTTCAAGACTGGCTATCTAACTTTGGCTTCACCTCGCTCCATGTTTGTCAGCCAAGTAGTAGGCACAACAATGGGCTGCATTATTTCCCCATGTGTCTTTTGGCTGTTTTACAAGGCATTTGATGATCTTGGTCTTGCAACGGGCGAATACCCTGCCCCTAACGCAGTTCTCTTTCGCAACATGGCCGTGTTGGGCGTCGAAGGTGTCTCGAGCCTACCAAAGAATTGTCTTACCCTCTGTTACGTGTTTTTCGCCACCTCCATTTTGATCAACTTGATCAAAGACCTGATACCAAAAAAATGGGCGAGGTTCATTCCTTTGCCTATGGCAATGGCAATACCGTTTTATATAGGGCCGTACTTCGCAATCGATATGAGCCTCGGAAGTTTGACATTGTTTGTGTGGCAAAAATTAAACAAAACCAAGGCCGATGCGTTCGGTCCAGCTGTAGCGTCTGGTTTGATATGTGGAGATGGGGTTTGGACGTTGCCTAATTCGATTTTGGCTTTGGCAGGAGTCAAGGCACCAATTTGCATGAAGTTCCTTTCGAGATCCAACAATGCAAGAGTAGATAAGTTCCTAAAATCGTCCATTTGA 1524 43.64 MVIDFKLTYPSGTATAHLINSFHTPRGAALAKKQVRLLGRFFSLSFLWGFFQWFFTSADGCGFAHFPSFGLKAYANKFYFDFSTTYIGVGMICPHIINVSVLVGGIISWGIMWPLIEDKKGQWYSEKLNFDDLSGLQGYKVFIAIAIILGDGLYNFFKVLTRTLSGLLYQLQHKREIEEFSSENSSRSEFSYDDERRKQLFLKDQIPIWFAIGGYVVIALVSINTLPHIFTQLKWYYILVIYIFAPVLAFCNAYGCGLTDWSLASTYGKLAIFTIGAWAGPLHGGVIAGLSACGVMMNIVSTASDLMQDFKTGYLTLASPRSMFVSQVVGTTMGCIISPCVFWLFYKAFDDLGLATGEYPAPNAVLFRNMAVLGVEGVSSLPKNCLTLCYVFFATSILINLIKDLIPKKWARFIPLPMAMAIPFYIGPYFAIDMSLGSLTLFVWQKLNKTKADAFGPAVASGLICGDGVWTLPNSILALAGVKAPICMKFLSRSNNARVDKFLKSSI 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 39517631 39522328 - Sed0011947.3 Sed08g2805 724581

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2805 507 PANTHER OLIGOPEPTIDE TRANSPORTER YGL114W-RELATED 1 494 IPR045035 GO:0016020(PANTHER)|GO:0035673(InterPro)
Sed08g2805 507 Pfam OPT oligopeptide transporter protein 1 477 IPR004813 GO:0035673(InterPro)
Sed08g2805 507 NCBIfam OPT family oligopeptide transporter 1 478 IPR004813 GO:0035673(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2805 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2805 Sed-Chr8:39517631 Sed11g2295 Sed-Chr11:36047912 5.10E-230 dispersed
Sed08g2804 Sed-Chr8:39517631 Sed08g2805 Sed-Chr8:39517631 3.00E-299 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g954 . . . . . . . . . Cmo18g00078 . . . . . Cpe20g00180 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed08g2805 . . Cma13g00959 Cma18g00101 Car13g00795 Car18g00091 . . Bhi08g01350 Tan05g2138 Cmetu04g2126 Lac10g0326 Hepe07g2321 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001400 2 2 2 3 2 2 3 2 2 3 2 2 3 3 3 3 2 1 3 2 3 2 2 1 2 3 2 6 4 2 74