Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2838 ATGATGGATCAGAATAAGTTGGGAGCAGATTCTCCTTCAAAAGGGGATCATTCTTCCAAGAGCAGTCATAAAAGTAATCAGACTGTTGAGAGGTTAGGAAGTCCACAGCATCAGAAGATTTCAGCAAGATGGGACCCGGATGAGGCATGCAGGCCTTTAGTTGATGAAGCACCTGTATTTTATCCTACTGTTGAGGAATTTGAAGATACACTTGGGTACATAGCTAAGATTCGTCCTCAAGCAGAATCTTATGGTATATGCCGGATTGTCCCTCCATCTTCTTGGAATCCACCATGTGTTCTTAAGGAGAAATCTATATGGGAAAATGCCAAATTTTCTACTCGCATTCAGCAAGTTGATTTGCTACAAAATAGGGAGCCCATGAAAAAGAAAAGTAGAGGTCGAAAACGCAAGCGAAGGAAGAACTCAAAAGCAGGGACATCGGCTAGAAGCACTAATCTTGCTGCAGAAGCAAACACCACTTCTGAGTCTGATGAAAAATTTGGATTCAATTCTGGGTCAGACTTCACACTCAAAGAATTCCAAGAATATGCAGACTATTTTAAGGAATGTTATTTTGGAATTAAGCAGGCTCAAGAGGTCTTAAATTTTGATACTAAATCTAGCAAGAGAGGGGAGCCTTCTGTGGAGGATATAGAGGGTGAATACTGGCGGATAGTTGAAAAATCTACAGATGAAGTTCAGGTTTACTATGGAGCTGATATAGAATCAGCAACATTTGACAGTGGCTTTCCCAAGGCCTCATCCATGGTAACTGAAGGAAATTCGGATCAGTATGTAAAGTCAGGTTGGAATCTTAATAACTTCCCTCGGTTACCAGGTTCTGTCCTGTGTTTTGAGGAAAGTGATATATCCGGAGTTCTAGTTCCATGGCTCTACGTTGGAATGTGTTTTTCATCGTTTTGTTGGCATGTTGAAGACCACCATCTTTACTCTTTAAACTATATGCACTGGGGCGATCCAAAAGTATGGTATGGAGTTCCTGGAAGCCACGCACCTTCTTTAGAAGCTGCAATGAAAAAACATTTGCCTGATTTGTTTGAAGAACAGCCAGATTTACTTCATGAATTGGTCACTCAGTTGTCTCCTTCAGTACTCAAATCTGAAGGAGTACCTGTGTATCGAGTGGTCCAGAATTCCAGGGAGTTTGTTCTTACCTTTCCAAGGGCATATCACGCAGGATTTAATTGTGGTTTTAACTGTGCTGAGGCTGTGAATGTGGCACCGGTTGACTGGTTGACTCATGGGCAAAATGCTGTAGAACTTTATAGTGCACAACGACATAGGACATCTATTTCACATGATAAATTATTATTTGGATCAGCTCTGGAAGCTGCACAGTCCCTTTGGGAGCTATTAGTTCTAGAAAAGAGAACTCCAAGCAATCAACGTTGGAAAAATGTGTGTGGGAAAGATGGAGATCTTACAAAAGTGATCAAGACAAGGGTGAAGATGGAGGAGGAAAGAATGGATTGCCTTCCAACTCTTATGAAGTTGCGAAAAATGGAAAGTGAGATTGATTTCAAAAGTGAGAGAGAGTGTTATGCCTGCTTCTATGACTTATATCACTCTTCAATCTCGTGCAAGTGTTCCCCAGATCGATTCTCGTGCCTTAAGCATGCTAGTAACTTTTGCTCATGTCCAGTTGATGACAGGTGTGTGATCTTTCGCTACAGTATAAAGGAGCTGCACACACTTGTTGGAGTATTAGAAGGGGAATTAGATGCCCTTAAAGAGTGGGCCTCAAGTTACTGCAAAACGGAAAAGAACAATGAATCTGCAGCTAAGGTGGAGTTGGATAGCAGTTTAATTGAAAAGCCTTCTTTGTCCCCAGAAATAACAAACAAGCGAAAAAGAACAGACGTCCCATGCAGTTCATCAAGTCATGCTTCTTCGGAAGTAGTGCAGTCAGAGTCTCACCGGGGATCGCTTAGCTTAAATACTTCCCACCTAAGTTCAGATAGTCAGAATGACATTGTAAATAGTGAAGTTGTGGTAAAACATAAAGAAGAGAAGGAAGGGCAGGAGTGCTGCATAGATTTGAACCTTGAAATAATTTCTGATGAGAATGGTAGTTGCGGGCACCACGAATCTGATAGCAAAATGATTATTGATTTGGAGGAAACATACACTTCGGTGCTTGAAGAAAAAAACGTTTGTAAAGCAGCACATAAATCAGAGTTGATGGAACTTGACAATGGTCATTTGAACACTTCTCCGGTTACTGATCACTTTTCAAGATTAAAAGATGGTGTGAGAATATGCGGATCCAATGGTCATAAGTTGTTTGGAATTGATCTTCCGCAGTCGCAGTCAGCATTTCCATCCAACAATTCCTCAAAAGTAGAAACTCAAAAACACTTGGATAAAAGAATACCATCTTGGCCAAGTTCTCCTTGGAATTTGGTTCCTTTTGTTGAACCTTTAAATATTGGAACAATTATGTTCGGAAAGCCTTGGCACTGCAAGAAGGCCATATTTCCAAAAGATTTTAGAAGCCGAGTGAAATTCTTTAGTGTGCTTAATCCTACTAGTATTGTTACCTACACTTCAGAAGTTCTTGATGGTGGGTTTCTGGGACCTCTATTCAAGGTGACCTTGGAAGAATCTCCCAGCGAAATCTTCACTAATGCCTCAGCAACCAAATGCTGGGACATGGTAGTTCAGAGATTAAACCAAGAAATCGAAAGACGGAACCTTAAAATGGGAGGAGTGGCTCCTTTGCAGCTTTTGGAAGAAGTTAATGGGCTCGAAATGTTTGGATTTCTTTCACCTCTCGTCATTCAGGCTATCGAGGCCCTTGATCCTAAACACCAGTGTGTGGAATATTGGAGCCACAGGCATCTCAAGGTACGCGAAAATTCAGGTGACAACACTAACTGCAAAAGTTCTGCTTTAAGATTGAATTTCTCTCCGGGCGAAACAAGTGCAACTGCTTTTGATATCAATAGGGAAGAAGATGAAAATGTCAATCCAACTCCAACTATAGGAATGGAGGGGCATCACCAAAATCAAGAGGTTCGGTCAGTTTTAAAGGGACTGTTAAACAAAGCTAGTCCTGAAGAACTGAGCACGCTGCAGAGCATATTATGCACAGAATTGCAAACTTCTGAATGGAGAGCAGAATTTTCAGCAATGATCAAAGAGAAACAGGAAAAATGTATATAG 3189 41.08 MMDQNKLGADSPSKGDHSSKSSHKSNQTVERLGSPQHQKISARWDPDEACRPLVDEAPVFYPTVEEFEDTLGYIAKIRPQAESYGICRIVPPSSWNPPCVLKEKSIWENAKFSTRIQQVDLLQNREPMKKKSRGRKRKRRKNSKAGTSARSTNLAAEANTTSESDEKFGFNSGSDFTLKEFQEYADYFKECYFGIKQAQEVLNFDTKSSKRGEPSVEDIEGEYWRIVEKSTDEVQVYYGADIESATFDSGFPKASSMVTEGNSDQYVKSGWNLNNFPRLPGSVLCFEESDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYMHWGDPKVWYGVPGSHAPSLEAAMKKHLPDLFEEQPDLLHELVTQLSPSVLKSEGVPVYRVVQNSREFVLTFPRAYHAGFNCGFNCAEAVNVAPVDWLTHGQNAVELYSAQRHRTSISHDKLLFGSALEAAQSLWELLVLEKRTPSNQRWKNVCGKDGDLTKVIKTRVKMEEERMDCLPTLMKLRKMESEIDFKSERECYACFYDLYHSSISCKCSPDRFSCLKHASNFCSCPVDDRCVIFRYSIKELHTLVGVLEGELDALKEWASSYCKTEKNNESAAKVELDSSLIEKPSLSPEITNKRKRTDVPCSSSSHASSEVVQSESHRGSLSLNTSHLSSDSQNDIVNSEVVVKHKEEKEGQECCIDLNLEIISDENGSCGHHESDSKMIIDLEETYTSVLEEKNVCKAAHKSELMELDNGHLNTSPVTDHFSRLKDGVRICGSNGHKLFGIDLPQSQSAFPSNNSSKVETQKHLDKRIPSWPSSPWNLVPFVEPLNIGTIMFGKPWHCKKAIFPKDFRSRVKFFSVLNPTSIVTYTSEVLDGGFLGPLFKVTLEESPSEIFTNASATKCWDMVVQRLNQEIERRNLKMGGVAPLQLLEEVNGLEMFGFLSPLVIQAIEALDPKHQCVEYWSHRHLKVRENSGDNTNCKSSALRLNFSPGETSATAFDINREEDENVNPTPTIGMEGHHQNQEVRSVLKGLLNKASPEELSTLQSILCTELQTSEWRAEFSAMIKEKQEKCI 1062
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 39638368 39646801 - Sed0020772.2 Sed08g2838 724614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2838 1062 ProSiteProfiles JmjC domain profile. 265 431 IPR003347 -
Sed08g2838 1062 MobiDBLite consensus disorder prediction 617 662 - -
Sed08g2838 1062 MobiDBLite consensus disorder prediction 123 166 - -
Sed08g2838 1062 ProSiteProfiles JmjN domain profile. 57 98 IPR003349 -
Sed08g2838 1062 MobiDBLite consensus disorder prediction 146 166 - -
Sed08g2838 1062 ProSiteProfiles FYR domain FYRN motif profile. 805 863 IPR003888 GO:0005634(InterPro)
Sed08g2838 1062 SMART cupin_9 265 431 IPR003347 -
Sed08g2838 1062 SUPERFAMILY Clavaminate synthase-like 231 459 - -
Sed08g2838 1062 Gene3D - 813 948 - -
Sed08g2838 1062 Pfam JmjC domain, hydroxylase 298 414 IPR003347 -
Sed08g2838 1062 ProSiteProfiles FYR domain FYRC motif profile. 865 955 IPR003889 GO:0005634(InterPro)
Sed08g2838 1062 MobiDBLite consensus disorder prediction 1 44 - -
Sed08g2838 1062 MobiDBLite consensus disorder prediction 631 662 - -
Sed08g2838 1062 MobiDBLite consensus disorder prediction 129 145 - -
Sed08g2838 1062 SMART fyrc_3 869 963 IPR003889 GO:0005634(InterPro)
Sed08g2838 1062 Gene3D Cupin 42 415 - -
Sed08g2838 1062 Pfam F/Y-rich N-terminus 816 863 IPR003888 GO:0005634(InterPro)
Sed08g2838 1062 SMART JmjN_1 56 97 IPR003349 -
Sed08g2838 1062 Pfam jmjN domain 58 91 IPR003349 -
Sed08g2838 1062 Pfam F/Y rich C-terminus 867 953 IPR003889 GO:0005634(InterPro)
Sed08g2838 1062 PANTHER LYSINE-SPECIFIC DEMETHYLASE 26 797 - GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006338(PANTHER)|GO:0010468(PANTHER)|GO:0032452(PANTHER)|GO:0034647(PANTHER)
Sed08g2838 1062 SMART fyrn_3 819 863 IPR003888 GO:0005634(InterPro)
Sed08g2838 1062 Pfam C5HC2 zinc finger 521 573 IPR004198 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1923 Sed-Chr1:14305168 Sed08g2838 Sed-Chr8:39638368 0.00E+00 dispersed
Sed03g2727 Sed-Chr3:43717478 Sed08g2838 Sed-Chr8:39638368 1.50E-227 dispersed
Sed08g2838 Sed-Chr8:39638368 Sed08g2840 Sed-Chr8:39638368 0.00E+00 dispersed
Sed08g2837 Sed-Chr8:39638368 Sed08g2838 Sed-Chr8:39638368 0.00E+00 tandem
Sed08g2838 Sed-Chr8:39638368 Sed08g2839 Sed-Chr8:39638368 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39472 PF02373 JmjC 3.20E-45 CL0029 Sed TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2838 K11446 - csv:101214856 1726.45