Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2840 ATGATGGATCAGAATAAGTTGGGAGCAGATTCTCCTTCAAAAGGGGATCATTCTTCCAAGAGCAGTCATAAAAGTAATCAGACTGTTGAGAGGTTAGGAAGTCCACAGCATCAGAAGATTTCAGCAAGATGGGACCCGGATGAGGCATGCAGGCCTTTAGTTGATGAAGCACCTGTATTTTATCCTACTGTTGAGGAATTTGAAGATACACTTGGGTACATAGCTAAGATTCGTCCTCAAGCAGAATCTTATGGTATATGCCGGATTGTCCCTCCATCTTCTTGGAATCCACCATGTGTTCTTAAGGAGAAATCTATATGGGAAAATGCCAAATTTTCTACTCGCATTCAGCAAGTTGATTTGCTACAAAATAGGGAGCCCATGAAAAAGAAAAGTAGAGGTCGAAAACGCAAGCGAAGGAAGAACTCAAAAGCAGGGACATCGGCTAGAAGCACTAATCTTGCTGCAGAAGCAAACACCACTTCTGAGTCTGATGAAAAATTTGGATTCAATTCTGGGTCAGACTTCACACTCAAAGAATTCCAAGAATATGCAGACTATTTTAAGGAATGTTATTTTGGAATTAAGCAGGCTCAAGAGGTCTTAAATTTTGATACTAAATCTAGCAAGAGAGGGGAGCCTTCTGTGGAGGATATAGAGGGTGAATACTGGCGGATAGTTGAAAAATCTACAGATGAAGTTCAGGTTTACTATGGAGCTGATATAGAATCAGCAACATTTGACAGTGGCTTTCCCAAGGCCTCATCCATGGTAACTGAAGGAAATTCGGATCAGTATGTAAAGTCAGGTTGGAATCTTAATAACTTCCCTCGGTTACCAGGTTCTGTCCTGTGTTTTGAGGAAAGTGATATATCCGGAGTTCTAGTTCCATGGCTCTACGTTGGAATGTGTTTTTCATCGTTTTGTTGGCATGTTGAAGACCACCATCTTTACTCTTTAAACTATATGCACTGGGGCGATCCAAAAGTATGGTATGGAGTTCCTGGAAGCCACGCACCTTCTTTAGAAGCTGCAATGAAAAAACATTTGCCTGATTTGTTTGAAGAACAGCCAGATTTACTTCATGAATTGGTCACTCAGTTGTCTCCTTCAGTACTCAAATCTGAAGGAGTACCTGTGTATCGAGTGGTCCAGAATTCCAGGGAGTTTGTTCTTACCTTTCCAAGGGCATATCACGCAGGATTTAATTGTGGTTTTAACTGTGCTGAGGCTGTGAATGTGGCACCGGTTGACTGGTTGACTCATGGGCAAAATGCTGTAGAACTTTATAGTGCACAACGACATAGGACATCTATTTCACATGATAAATTATTATTTGGATCAGCTCTGGAAGCTGCACAGTCCCTTTGGGAGCTATTAGTTCTAGAAAAGAGAACTCCAAGCAATCAACGTTGGAAAAATGTGTGTGGGAAAGATGGAGATCTTACAAAAGTGATCAAGACAAGGGTGAAGATGGAGGAGGAAAGAATGGATTGCCTTCCAACTCTTATGAAGTTGCGAAAAATGGAAAGTGAGATTGATTTCAAAAGTGAGAGAGAGTGTTATGCCTGCTTCTATGACTTATATCACTCTTCAATCTCGTGCAAGTGTTCCCCAGATCGATTCTCGTGCCTTAAGCATGCTAGTAACTTTTGCTCATGTCCAGTTGATGACAGGTGTGTGATCTTTCGCTACAGTATAAAGGAGCTGCACACACTTGTTGGAGTATTAGAAGGGGAATTAGATGCCCTTAAAGAGTGGGCCTCAAGTTACTGCAAAACGGAAAAGAACAATGAATCTGCAGCTAAGGTGGAGTTGGATAGCAGTTTAATTGAAAAGCCTTCTTTGTCCCCAGAAATAACAAACAAGCGAAAAAGAACAGACGTCCCATGCAGTTCATCAAGTCATGCTTCTTCGGAAGTAGTGCAGTCAGAGTCTCACCGGGGATCGCTTAGCTTAAATACTTCCCACCTAAGTTCAGATAGTCAGAATGACATTGTAAATAGTGAAGTTGTGGTAAAACATAAAGAAGAGAAGGAAGGGCAGGAGTGCTGCATAGATTTGAACCTTGAAATAATTTCTGATGAGAATGGTAGTTGCGGGCACCACGAATCTGATAGCAAAATGATTATTGATTTGGAGGAAACATACACTTCGGTGCTTGAAGAAAAAAACGTTTGTAAAGCAGCACATAAATCAGAGTTGATGGAACTTGACAATGGTCATTTGAACACTTCTCCGGTTACTGATCACTTTTCAAGATTAAAAGATGGTGTGAGAATATGCGGATCCAATGGTCATAAGTTGTTTGGAATTGATCTTCCGCAGTCGCAGTCAGCATTTCCATCCAACAATTCCTCAAAAGTAGAAACTCAAAAACACTTGGATAAAAGAATACCATCTTGGCCAAGTTCTCCTTGGAATTTGGTTCCTTTTGTTGAACCTTTAAATATTGGAACAATTATGTTCGGAAAGCCTTGGCACTGCAAGAAGGCCATATTTCCAAAAGATTTTAGAAGCCGAGTGAAATTCTTTAGTGTGCTTAATCCTACTAGTATTGTTACCTACACTTCAGAAGTTCTTGATGGTGGGTTTCTGGGACCTCTATTCAAGGTGACCTTGGAAGAATCTCCCAGCGAAATCTTCACTAATGCCTCAGCAACCAAATGCTGGGACATGGTAGTTCAGAGATTAAACCAAGAAATCGAAAGACGGAACCTTAAAATGGGAGGAGTGGCTCCTTTGCAGCTTTTGGAAGAAGTTAATGGGCTCGAAATGTTTGGATTTCTTTCACCTCTCGTCATTCAGGCTATCGAGGCCCTTGATCCTAAACACCAGTGTGTGGAATATTGGAGCCACAGGCATCTCAAGGTACGCGAAAATTCAGGTGACAACACTAACTGCAAAAGTTCTGCTTTAAGATTGAATTTCTCTCCGGGCGAAACAAGTGCAACTGCTTTTGATATCAATAGGGAAGAAGATGAAAATGTCAATCCAACTCCAACTATAGGAATGGAGGGGCATCACCAAAATCAAGAGGTTCGGTCAGTTTTAAAGGGACTGTTAAACAAAGCTAGTCCTGAAGAACTGAGCACGCTGCAGAGCATATTATGCACAGAATTGCAAACTTCTGAATGGAGAGCAGAATTTTCAGCAATGATCAAAGAGAAACAGGAAAAATGTATATAG 3189 41.08 MMDQNKLGADSPSKGDHSSKSSHKSNQTVERLGSPQHQKISARWDPDEACRPLVDEAPVFYPTVEEFEDTLGYIAKIRPQAESYGICRIVPPSSWNPPCVLKEKSIWENAKFSTRIQQVDLLQNREPMKKKSRGRKRKRRKNSKAGTSARSTNLAAEANTTSESDEKFGFNSGSDFTLKEFQEYADYFKECYFGIKQAQEVLNFDTKSSKRGEPSVEDIEGEYWRIVEKSTDEVQVYYGADIESATFDSGFPKASSMVTEGNSDQYVKSGWNLNNFPRLPGSVLCFEESDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYMHWGDPKVWYGVPGSHAPSLEAAMKKHLPDLFEEQPDLLHELVTQLSPSVLKSEGVPVYRVVQNSREFVLTFPRAYHAGFNCGFNCAEAVNVAPVDWLTHGQNAVELYSAQRHRTSISHDKLLFGSALEAAQSLWELLVLEKRTPSNQRWKNVCGKDGDLTKVIKTRVKMEEERMDCLPTLMKLRKMESEIDFKSERECYACFYDLYHSSISCKCSPDRFSCLKHASNFCSCPVDDRCVIFRYSIKELHTLVGVLEGELDALKEWASSYCKTEKNNESAAKVELDSSLIEKPSLSPEITNKRKRTDVPCSSSSHASSEVVQSESHRGSLSLNTSHLSSDSQNDIVNSEVVVKHKEEKEGQECCIDLNLEIISDENGSCGHHESDSKMIIDLEETYTSVLEEKNVCKAAHKSELMELDNGHLNTSPVTDHFSRLKDGVRICGSNGHKLFGIDLPQSQSAFPSNNSSKVETQKHLDKRIPSWPSSPWNLVPFVEPLNIGTIMFGKPWHCKKAIFPKDFRSRVKFFSVLNPTSIVTYTSEVLDGGFLGPLFKVTLEESPSEIFTNASATKCWDMVVQRLNQEIERRNLKMGGVAPLQLLEEVNGLEMFGFLSPLVIQAIEALDPKHQCVEYWSHRHLKVRENSGDNTNCKSSALRLNFSPGETSATAFDINREEDENVNPTPTIGMEGHHQNQEVRSVLKGLLNKASPEELSTLQSILCTELQTSEWRAEFSAMIKEKQEKCI 1062
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 39638368 39646801 - Sed0020772.4 Sed08g2840 724616

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2840 1062 ProSiteProfiles JmjC domain profile. 265 431 IPR003347 -
Sed08g2840 1062 MobiDBLite consensus disorder prediction 617 662 - -
Sed08g2840 1062 MobiDBLite consensus disorder prediction 123 166 - -
Sed08g2840 1062 ProSiteProfiles JmjN domain profile. 57 98 IPR003349 -
Sed08g2840 1062 MobiDBLite consensus disorder prediction 146 166 - -
Sed08g2840 1062 ProSiteProfiles FYR domain FYRN motif profile. 805 863 IPR003888 GO:0005634(InterPro)
Sed08g2840 1062 SMART cupin_9 265 431 IPR003347 -
Sed08g2840 1062 SUPERFAMILY Clavaminate synthase-like 231 459 - -
Sed08g2840 1062 Gene3D - 813 948 - -
Sed08g2840 1062 Pfam JmjC domain, hydroxylase 298 414 IPR003347 -
Sed08g2840 1062 ProSiteProfiles FYR domain FYRC motif profile. 865 955 IPR003889 GO:0005634(InterPro)
Sed08g2840 1062 MobiDBLite consensus disorder prediction 1 44 - -
Sed08g2840 1062 MobiDBLite consensus disorder prediction 631 662 - -
Sed08g2840 1062 MobiDBLite consensus disorder prediction 129 145 - -
Sed08g2840 1062 SMART fyrc_3 869 963 IPR003889 GO:0005634(InterPro)
Sed08g2840 1062 Gene3D Cupin 42 415 - -
Sed08g2840 1062 Pfam F/Y-rich N-terminus 816 863 IPR003888 GO:0005634(InterPro)
Sed08g2840 1062 SMART JmjN_1 56 97 IPR003349 -
Sed08g2840 1062 Pfam jmjN domain 58 91 IPR003349 -
Sed08g2840 1062 Pfam F/Y rich C-terminus 867 953 IPR003889 GO:0005634(InterPro)
Sed08g2840 1062 PANTHER LYSINE-SPECIFIC DEMETHYLASE 26 797 - GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006338(PANTHER)|GO:0010468(PANTHER)|GO:0032452(PANTHER)|GO:0034647(PANTHER)
Sed08g2840 1062 SMART fyrn_3 819 863 IPR003888 GO:0005634(InterPro)
Sed08g2840 1062 Pfam C5HC2 zinc finger 521 573 IPR004198 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2840 K11446 - - csv:101214856 1726.45
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2838 Sed-Chr8:39638368 Sed08g2840 Sed-Chr8:39638368 0.00E+00 dispersed
Sed08g2839 Sed-Chr8:39638368 Sed08g2840 Sed-Chr8:39638368 0.00E+00 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed03g2727 . 1 1227 JUMONJI Transcription Factor Family AT1G08620 53.3 0.0e+00 1235.3
Sed08g2837 . 29 971 JUMONJI Transcription Factor Family AT1G30810 50.1 6.3e-246 848.2
Sed08g2838 . 29 971 JUMONJI Transcription Factor Family AT1G30810 50.1 6.3e-246 848.2
Sed08g2839 . 29 971 JUMONJI Transcription Factor Family AT1G30810 50.1 6.3e-246 848.2
Sed08g2840 . 29 971 JUMONJI Transcription Factor Family AT1G30810 50.1 6.3e-246 848.2
Sed01g1923 . 27 973 JUMONJI Transcription Factor Family AT1G30810 50.1 4.2e-242 835.5
Sed01g1924 . 27 973 JUMONJI Transcription Factor Family AT1G30810 50.1 4.2e-242 835.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003199 1 6 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 5 1 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39474 PF02373 JmjC 3.20E-45 CL0029 Sed TR