Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2851 ATGGATCCTTTCAATTCCTCTCATGATCATCATCATTATCATCAAGATCATGAACAAGAAACCACCACTTCTTCAGATCTACAATTTCATCAACAACAACAACAACAAAATCCCACATCGAATAATTCTCTCCAAATGCGTCAATTATTAACCCGTTGTGCTCATTTCATCTCTCAATCCGATTTCCTCTCAGCCCATCAACTTCTCTCCATCCTCAATTCAAATTCTTCCCCTTATGGTGATTCCACTGAGAGATTACTTCACTATTTCTCTACTCCTCTTTCCCTCCAAATCCCAAATCATAATTCCAATTCCAATTCAAATCTCAAATCTCTTGATAACCAAGAAGAAGAAGAGGTTAAAAAGATTCAATCTTGCTACTTATCATTGAATCAAATCACACCCTTTATTAGATTTTGTCATTTGACTGCAAATCAGGCCATTTTGGAAGCCAATATTGAGGATGGAAGGAATATTCATGTTTTGGATTTTGATATCATGCATGGTGTTCAATGGCCTCCTCTCATGCAGGCTTTGGTTGAGAGATACCCTTCTCCTTCTCTTAGGATCACTGCCACTGGCTCTGACCTTAACTTTCTCCACAAGACTGGTGATAGGCTCTCCAAATTTGCTCTCTCTCTTGGCTTGAGCTTCCACTTCCATCCTCTCCTTCTTCTTCACGACCGCGACGTCCACCGCCTCGTCCCCTCCGCTCTCTCCCTCTTCCCCGACGAAGCTCTCGCCGTCAACTGCGTTCTCTACTTGCACAGGCTTTCAAAGGAGGATCTTGGGTTATTACTTCATAAAATTAAGGCTTTGAATCCAAAAGTGGTGACAATAGCAGAAAAGGAAGCAAATTTCAACCACCCTTTATTCATGCAAAGATTTCTAGAGGCATTGAATCATTACTCACTAATATTTGACTCATTGGAAGCAACTTTACCCCCAAATAGTAGGGAGAGGTTGGCAGTGGAGCAAGTTTGGTTCGGAAGGGAAATAAACGACGTCGTTTCGGGAGACGCCAACAAGAGAAGGAACCACCATGAGAGGTATGAATCATGGGAGATTATGCTTAAGAGTTTAGGGTTTTCTAATATTCCTTTAAGCCCTTTTGCCCTTTCACAAGCTAAACTCCTCTTGAGGCTTCATTATCCTTCTGAAGGCTACCATCTTCAAATCCTTCATGATTCCCTTTTTCTTGGATGGCAAAATAGACCCCTTTTTTCAGTTTCTTCTTGGCAATGA 1245 41.37 MDPFNSSHDHHHYHQDHEQETTTSSDLQFHQQQQQQNPTSNNSLQMRQLLTRCAHFISQSDFLSAHQLLSILNSNSSPYGDSTERLLHYFSTPLSLQIPNHNSNSNSNLKSLDNQEEEEVKKIQSCYLSLNQITPFIRFCHLTANQAILEANIEDGRNIHVLDFDIMHGVQWPPLMQALVERYPSPSLRITATGSDLNFLHKTGDRLSKFALSLGLSFHFHPLLLLHDRDVHRLVPSALSLFPDEALAVNCVLYLHRLSKEDLGLLLHKIKALNPKVVTIAEKEANFNHPLFMQRFLEALNHYSLIFDSLEATLPPNSRERLAVEQVWFGREINDVVSGDANKRRNHHERYESWEIMLKSLGFSNIPLSPFALSQAKLLLRLHYPSEGYHLQILHDSLFLGWQNRPLFSVSSWQ 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 39714130 39716068 - Sed0010842.1 Sed08g2851 724627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2851 414 ProSiteProfiles GRAS family profile. 37 414 IPR005202 -
Sed08g2851 414 MobiDBLite consensus disorder prediction 1 23 - -
Sed08g2851 414 Pfam GRAS domain family 46 414 IPR005202 -
Sed08g2851 414 MobiDBLite consensus disorder prediction 1 41 - -
Sed08g2851 414 MobiDBLite consensus disorder prediction 24 41 - -
Sed08g2851 414 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 33 413 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0010014(PANTHER)|GO:0043565(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2851 Sed-Chr8:39714130 Sed11g2281 Sed-Chr11:35982823 7.20E-65 dispersed
Sed08g2851 Sed-Chr8:39714130 Sed08g2860 Sed-Chr8:39812224 4.40E-46 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39475 PF03514 GRAS 3.80E-117 CL0063 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2851 K27746 - csv:101213853 595.89