Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2852 ATGGGTTCTTGCCATTCATCTTCTAAAGCCAGGTGGAGCAGCGGCGGCGCTCATTTCGCCGTTACGGCGGCTGAAGCTCCGGCGGCTTCTTCTTCAACTGTGTCCTTTTCTTCTTCTTCATTGTTGCACTCTAAGTCAAGTAAACCGCGTTGGTGGAAGAAGAATTCGAGTAAAACTTTTGGGGTTGGGGTTTGTTCAGAGAAGCTTCATGAATTTGAGATTCCGGGGAGGATTTGCTCTAATGGGTCTTCGAAAGTTGCTTGTTTGTATACACAGCAGGGAAAGAAAGGGGTTAATCAAGACGCCATGGTTGTGCAGGAGAATTTTAATTCAAGTAGAGATACAATATTTTGTGGTGTATTTGATGGACATGGTCCTTTCGGCCATATGGTTGCAAAAAAAGTTCGTGATACCCTCCCTTTAATCCTCTGTACACAATGGACATCTAAATCCGACGAAGATCAAAATGGCATCTTTAAGATGAGACGCTCCAGAAGTTCTAATTCCGAAGATCCGGTTGCTTTGGACGGTGATGAAGACCTTTACAAGTCATTGGAGGCTGAGGAAAATGAAAAATTCCCCAAGATGTTTCTGCCACTCAAAGTATCTTTACTGAAGTCCTTCAAATTAATGGATAAAGAGTTGAATATGCATCCTAAAATTGATTGTTTTTGCAGTGGATCCACGGCCGTGACTCTAATAAAGCAGGGTCAGAACCTTGTACTTGGAAATGTTGGTGACTCGAGGGCGGTGCTGGCTACAAGAGATGAAGATAACTCTTTGATTCCGGTTCAATTAACAGTCGACTTGAAACCTGACCTTCCTGGTGAAGCTGCAAGGATTCACCAATGCAAAGGAAGGGTCTTCGCTTTGCAGGATGAGCCCGAAGTTGCACGAGTATGGTTGCCCAATAATGATTCGCCTGGTTTAGCAATGGCAAGAGCTTTTGGAGACTTTTGTCTGAAGGATTTCGGTCTAATTTCCGTTCCCGATGTTTACTATCGTCACCTTACTGCAAGAGATCAGTTTGTAATTCTTGCCACAGATGGGATTTGGGATGTCCTTTCAAATAAGGAAGCGATCGAAATTGTTGCATCAGCCCCTTCTCGTGAAACAGCAGCCAGAGCTCTTGTTGACTGTGCTGTTCGTGCATGGAGGCTGAAATATCCTACATCCAAGACCGATGATTGTGCTGTTGTATGTCTCTTTCTCGAGTATGAGCCCGAAGCAGAAGAGAACACGAAAACTTGTGCAGAAGTAGTGGAAGAAGTTCTGGCAACGCCCAGCGACGATGCTAAAGATATCGAAGTTGATTCCGATCATAGAATGACTGTTCTTGAGTTGTCAGGTACTCTACAAAGCTCTAACGAAATTGTGCCTGTTTCCGACCCGATTGACGAGAAGACTGCAGTTGGAGGGCGAAACCCGTCGAAGAGAAGTTTAGCCGAGTGCATTTCGAATGAAGAGGAGGAATGGTCTGCATTGGAGGGTATTACCAGAGTGAATAGTTTGCTAAGCCTTCCAAGGTTCCTATCTGGTGACAAAAGATCAAGCAGTTGGAGGAAGTGGCTATGA 1575 44.76 MGSCHSSSKARWSSGGAHFAVTAAEAPAASSSTVSFSSSSLLHSKSSKPRWWKKNSSKTFGVGVCSEKLHEFEIPGRICSNGSSKVACLYTQQGKKGVNQDAMVVQENFNSSRDTIFCGVFDGHGPFGHMVAKKVRDTLPLILCTQWTSKSDEDQNGIFKMRRSRSSNSEDPVALDGDEDLYKSLEAEENEKFPKMFLPLKVSLLKSFKLMDKELNMHPKIDCFCSGSTAVTLIKQGQNLVLGNVGDSRAVLATRDEDNSLIPVQLTVDLKPDLPGEAARIHQCKGRVFALQDEPEVARVWLPNNDSPGLAMARAFGDFCLKDFGLISVPDVYYRHLTARDQFVILATDGIWDVLSNKEAIEIVASAPSRETAARALVDCAVRAWRLKYPTSKTDDCAVVCLFLEYEPEAEENTKTCAEVVEEVLATPSDDAKDIEVDSDHRMTVLELSGTLQSSNEIVPVSDPIDEKTAVGGRNPSKRSLAECISNEEEEWSALEGITRVNSLLSLPRFLSGDKRSSSWRKWL 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 39723223 39728995 - Sed0013362.1 Sed08g2852 724628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2852 524 Gene3D - 79 406 IPR036457 -
Sed08g2852 524 SMART PP2C_4 77 402 IPR001932 -
Sed08g2852 524 ProSiteProfiles PPM-type phosphatase domain profile. 86 404 IPR001932 -
Sed08g2852 524 Pfam Protein phosphatase 2C 191 382 IPR001932 -
Sed08g2852 524 SUPERFAMILY PP2C-like 80 405 IPR036457 -
Sed08g2852 524 CDD PP2Cc 86 404 IPR001932 -
Sed08g2852 524 FunFam probable protein phosphatase 2C 33 81 407 - -
Sed08g2852 524 PANTHER PROTEIN PHOSPHATASE 80 403 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2852 Sed-Chr8:39723223 Sed11g1235 Sed-Chr11:28150901 1.20E-133 dispersed
Sed08g2852 Sed-Chr8:39723223 Sed09g0429 Sed-Chr9:4325155 3.90E-116 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2852 - - - 0.0