Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2857 ATGGCTTCCCATTCCTACAAGGGAATTCGTTGCCGGGGTGGAAAATGGGTGTCGGAGATTCGAGAGCCGCGAAAGACTACCCGAATATGGCTCGGTACATACTCTACGGCGGAGATGGCTGCAGCGGCCTACGACGTGGCTGCGCTTGCCCTCAAGGGCCACAATGCCGTTCTAAACTTCCCGGACTCAATCGGGTCCTACCCGGTTCCCGCCTCCACGTCCCCAGCTGACATTCGTGTTGCTGCGGCTGCTGCTGCAGCTTCTAAAAGAGTTGACCAAGGAGAAAGCAGCAGTTATCATAACCACCATCCGTCTCCACAACCGAGCGAGTTCATCGATGAAGAGCTGGAGCTATTTGGAATGCCGAATCTGCTGGTCGATATGGCTGAGGGAATGCTGTTGTCGCCACCGCGAATGAGCTCGTCGCCATCCCGATACGACAACTACTCGTGGAATTCTGGCATAGACGGAAACCTATGGAGCTACTATTAG 492 54.88 MASHSYKGIRCRGGKWVSEIREPRKTTRIWLGTYSTAEMAAAAYDVAALALKGHNAVLNFPDSIGSYPVPASTSPADIRVAAAAAAASKRVDQGESSSYHNHHPSPQPSEFIDEELELFGMPNLLVDMAEGMLLSPPRMSSSPSRYDNYSWNSGIDGNLWSYY 163
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 39791832 39793356 - Sed0002692.1 Sed08g2857 724633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2857 163 Gene3D AP2/ERF domain 5 62 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed08g2857 163 CDD AP2 6 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed08g2857 163 ProSiteProfiles AP2/ERF domain profile. 5 61 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed08g2857 163 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 5 162 IPR045277 GO:0003700(InterPro)
Sed08g2857 163 Pfam AP2 domain 6 54 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed08g2857 163 MobiDBLite consensus disorder prediction 91 105 - -
Sed08g2857 163 SMART rav1_2 5 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed08g2857 163 MobiDBLite consensus disorder prediction 89 108 - -
Sed08g2857 163 FunFam Ethylene-responsive transcription factor 2 4 62 - -
Sed08g2857 163 SUPERFAMILY DNA-binding domain 6 63 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0834 Sed-Chr5:6581566 Sed08g2857 Sed-Chr8:39791832 4.60E-40 dispersed
Sed07g1072 Sed-Chr7:7742435 Sed08g2857 Sed-Chr8:39791832 1.50E-33 dispersed
Sed08g2857 Sed-Chr8:39791832 Sed10g1110 Sed-Chr10:12217342 6.20E-28 dispersed
Sed08g2857 Sed-Chr8:39791832 Sed01g3918 Sed-Chr1:68377726 1.10E-43 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39476 PF00847 AP2 1.50E-10 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2857 - - - 0.0